Hi all, I am hoping to annotate SNP in GFF3 and having it displayed in Apollo. i.e. I have a reference genome and some sequence assembly that are mapped to the reference genome. In those sequence assembly, there exists SNPs. How do I represent this appropriately so that the information could be nicely shown in Apollo. I have attached a naive way of mine. I believe there certainly exists better way. i.e. I am think the "Parent" attribute should be used in column 9 (attributes) of SNP to associate SNPs with the assembly. Also, I am currently using "region" for the column 3 (type) for those assembly but I believe there should exist a better SO term to use. I wonder if anyone has already done it or have any suggestion/advice on how to get it done. Thanks! Regards,Ah Fu
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Chacoense4_Genome_Chr1.gff
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