Hi Darek, It looks like you have spaces rather than tabs between most of your columns. GFF3 must have 9 tab delimited columns, but I think you only have tabs between columns 8 and 9, whereas the rest of the columns are separated by spaces.
Scott On Fri, Mar 5, 2010 at 1:32 PM, dar ked <[email protected]> wrote: > Hello, > > I am having a problem with loading gff3-like(?) file into Apollo > 1.11.3. Changing "CDS" to "match" solves the problem, but making the output > of this gene prediction program compatible with Apollo would be much more > sensible. > > Below is uuencoded small gff3 file. > > If anybody can point to incompatible things / provide me with > version acceptable by Apollo that will be very helpful. > > Sincerely yours, > > Darek Kedra > PS the error is: > Exception in thread "Thread-55" > apollo.dataadapter.NonFatalDataAdapterException: Invalid number of columns > at apollo.dataadapter.gff3.GFF3Entry.parseData(GFF3Entry.java:523) > at apollo.dataadapter.gff3.GFF3Entry.<init>(GFF3Entry.java:72) > > > > > > > _______________________________________________ > apollo mailing list > [email protected] > http://mail.fruitfly.org/mailman/listinfo/apollo > -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research _______________________________________________ apollo mailing list [email protected] http://mail.fruitfly.org/mailman/listinfo/apollo
