Date: Thursday, May 3, 2018 @ 09:02:20
Author: archange
Revision: 318816
archrelease: copy trunk to community-staging-x86_64
Added:
hdf5-openmpi/repos/community-staging-x86_64/
hdf5-openmpi/repos/community-staging-x86_64/PKGBUILD
(from rev 318815, hdf5-openmpi/trunk/PKGBUILD)
hdf5-openmpi/repos/community-staging-x86_64/mpi.patch
(from rev 318815, hdf5-openmpi/trunk/mpi.patch)
-----------+
PKGBUILD | 78 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
mpi.patch | 18 +++++++++++++
2 files changed, 96 insertions(+)
Copied: hdf5-openmpi/repos/community-staging-x86_64/PKGBUILD (from rev 318815,
hdf5-openmpi/trunk/PKGBUILD)
===================================================================
--- community-staging-x86_64/PKGBUILD (rev 0)
+++ community-staging-x86_64/PKGBUILD 2018-05-03 09:02:20 UTC (rev 318816)
@@ -0,0 +1,78 @@
+# $Id$
+# Maintainer: Ronald van Haren <ronald.archlinux.org>
+# Maintainer: Bruno Pagani <archa...@archlinux.org>
+# Contributor: Stefan Husmann <stefan-husm...@t-online.de>
+# Contributor: damir <da...@archlinux.org>
+# Contributor: Tom K <t...@runbox.com>
+# Contributor: Jed Brown <j...@59a2.org>
+# Contributor: Simone Pezzuto <junki....@gmail.com>
+
+_pkgname=hdf5
+_mpi=openmpi
+pkgname=${_pkgname}-${_mpi}
+pkgver=1.10.1
+pkgrel=4
+pkgdesc="General purpose library and file format for storing scientific data
(${_mpi} version)"
+arch=('x86_64')
+url="https://www.hdfgroup.org/HDF5/";
+license=('custom')
+depends=('zlib' 'libaec' 'bash' 'openmpi')
+makedepends=('time' 'gcc-fortran')
+provides=('hdf5' 'hdf5-cpp-fortran' "hdf5-fortran-${_mpi}")
+conflicts=('hdf5')
+replaces=("hdf5-fortran-${_mpi}")
+source=("https://support.hdfgroup.org/ftp/HDF5/releases/${_pkgname}-${pkgver:0:4}/${_pkgname}-${pkgver/_/-}/src/${_pkgname}-${pkgver/_/-}.tar.bz2";
+ 'mpi.patch')
+md5sums=('d89893c05ee7ea8611b51bb39450d64e'
+ 'dfa8dd50b8a7ebb3ad7249c627156cf9')
+
+prepare() {
+ cd ${_pkgname}-${pkgver/_/-}
+
+ # FS#33343
+ patch -p1 -i ../mpi.patch
+}
+
+build() {
+ cd ${_pkgname}-${pkgver/_/-}
+ ./configure \
+ CXX="mpicxx" \
+ CC="mpicc" \
+ FC="mpif90" \
+ F9X="mpif90" \
+ RUNPARALLEL="mpirun" \
+ OMPI_MCA_disable_memory_allocator=1 \
+ --prefix=/usr \
+ --docdir=/usr/share/doc/hdf5/ \
+ --disable-static \
+ --disable-sharedlib-rpath \
+ --enable-build-mode=production \
+ --enable-hl \
+ --enable-cxx \
+ --enable-fortran \
+ --enable-parallel \
+ --enable-unsupported \
+ --with-pic \
+ --with-zlib \
+ --with-szlib
+ make
+}
+
+# Check are failing with error while loading shared libraries: libhdf5.so.101:
cannot open shared object file: No such file or directory
+#check() {
+# cd ${pkgname}-${pkgver/_/-}
+# make check
+#}
+
+package() {
+ cd ${_pkgname}-${pkgver/_/-}
+
+ make DESTDIR="${pkgdir}" install
+
+ rm -rf "${pkgdir}"/usr/lib/libdynlib*.so
+
+ install -dm755 "${pkgdir}"/usr/share/${_pkgname}
+ mv "${pkgdir}"/usr/share/{hdf5_examples,${_pkgname}/examples}
+
+ install -Dm644 COPYING "${pkgdir}"/usr/share/licenses/${_pkgname}/LICENSE
+}
Copied: hdf5-openmpi/repos/community-staging-x86_64/mpi.patch (from rev 318815,
hdf5-openmpi/trunk/mpi.patch)
===================================================================
--- community-staging-x86_64/mpi.patch (rev 0)
+++ community-staging-x86_64/mpi.patch 2018-05-03 09:02:20 UTC (rev 318816)
@@ -0,0 +1,18 @@
+Prevent accidental inclusion of mpi c++ headers
+when hdf5.h is included third party library
+
+https://bugs.gentoo.org/show_bug.cgi?id=420777
+https://bugs.archlinux.org/task/33343
+
+--- a/src/H5public.h
++++ b/src/H5public.h
+@@ -58,6 +58,8 @@
+ # include <stddef.h>
+ #endif
+ #ifdef H5_HAVE_PARALLEL
++# define OMPI_SKIP_MPICXX /* Make sure that cxx specific headers are not
included */
++# define MPICH_SKIP_MPICXX
+ # include <mpi.h>
+ #ifndef MPI_FILE_NULL /*MPIO may be defined in mpi.h already */
+ # include <mpio.h>
+
