Date: Saturday, August 6, 2022 @ 17:37:24 Author: arodseth Revision: 1260456
archrelease: copy trunk to community-x86_64 Added: med-openmpi/repos/community-x86_64/PKGBUILD (from rev 1260455, med-openmpi/trunk/PKGBUILD) med-openmpi/repos/community-x86_64/hdf5-1.12.patch (from rev 1260455, med-openmpi/trunk/hdf5-1.12.patch) -----------------+ PKGBUILD | 53 +++++++++++++++ hdf5-1.12.patch | 189 ++++++++++++++++++++++++++++++++++++++++++++++++++++++ 2 files changed, 242 insertions(+) Copied: med-openmpi/repos/community-x86_64/PKGBUILD (from rev 1260455, med-openmpi/trunk/PKGBUILD) =================================================================== --- PKGBUILD (rev 0) +++ PKGBUILD 2022-08-06 17:37:24 UTC (rev 1260456) @@ -0,0 +1,53 @@ +# Maintainer: Alexander F. Rødseth <xypr...@archlinux.org> +# Contributor: Guilhem Saurel <guil...@saurel.me> +# Contributor: Michel Zou +# Contributor: Oliver Goethel +# Contributor: Gustavo Alvarez <sl1pk...@gmail.com> + +pkgname=med-openmpi +pkgver=4.1.1 +pkgrel=1 +pkgdesc='Generic pre- and post-processing platform for numerical simulation' +url="https://www.salome-platform.org/downloads" +license=(LGPL) +arch=(x86_64) +provides=(med) +conflicts=(med) +replaces=(med) +depends=(hdf5-openmpi python tk) +makedepends=(cmake gcc-fortran ninja openmpi swig) +source=("https://files.salome-platform.org/Salome/other/med-$pkgver.tar.gz" + hdf5-1.12.patch) +b2sums=('fb9bc3239c18c53fa42c5dd1101559746e8d38db2a3cb5fb47d1bf0cb578facc4ab95409af8524f5c20251848842cc1a331f6a816ce0754e9a6c95f507174ed1' + '998958970918d98724b80f7b5ff09558f7abea39cdac5e558b66410c4d8d1476b0407295f3745ece5586482bf76db3eef0139918d27d1bbc3eb166ed7ab4745a') + +prepare() { + cd med-${pkgver}_SRC + patch -p1 -i ../hdf5-1.12.patch # Fix build with hdf5 1.12 (Fedora) + sed -i 's/if H5_VERS_MINOR > 10/if 0/g' src/ci/MEDfileCompatibility.c +} + +build() { + export CPPFLAGS+=' -DH5_USE_110_API' + cmake \ + -B build \ + -D CMAKE_BUILD_TYPE=Release \ + -D CMAKE_INSTALL_PREFIX=/usr \ + -D CMAKE_SKIP_RPATH=ON \ + -D MEDFILE_BUILD_PYTHON=ON \ + -D MEDFILE_BUILD_TESTS=OFF \ + -D MEDFILE_INSTALL_DOC=OFF \ + -D MEDFILE_USE_MPI=ON \ + -G Ninja \ + -S med-${pkgver}_SRC + ninja -C build +} + +check() { + cd build + LD_LIBRARY_PATH="$srcdir/build/src" ctest -E '._Python' --output-on-failure +} + +package() { + DESTDIR="$pkgdir" ninja -C build install +} Copied: med-openmpi/repos/community-x86_64/hdf5-1.12.patch (from rev 1260455, med-openmpi/trunk/hdf5-1.12.patch) =================================================================== --- hdf5-1.12.patch (rev 0) +++ hdf5-1.12.patch 2022-08-06 17:37:24 UTC (rev 1260456) @@ -0,0 +1,189 @@ +diff -rupN med-4.1.0/config/cmake_files/medMacros.cmake med-4.1.0-new/config/cmake_files/medMacros.cmake +--- med-4.1.0/config/cmake_files/medMacros.cmake 2021-12-03 09:35:30.675827163 +0100 ++++ med-4.1.0-new/config/cmake_files/medMacros.cmake 2021-12-03 09:32:31.894994147 +0100 +@@ -447,7 +447,7 @@ MACRO(MED_FIND_HDF5) + ## + ## Requires 1.10.x version + ## +- IF (NOT HDF_VERSION_MAJOR_REF EQUAL 1 OR NOT HDF_VERSION_MINOR_REF EQUAL 10 OR NOT HDF_VERSION_RELEASE_REF GREATER 1) ++ IF (HDF5_VERSION VERSION_LESS 1.10.2) + MESSAGE(FATAL_ERROR "HDF5 version is ${HDF_VERSION_REF}. Only versions >= 1.10.2 are supported.") + ENDIF() + ## +diff -rupN med-4.1.0/src/ci/MEDfileCompatibility.c med-4.1.0-new/src/ci/MEDfileCompatibility.c +--- med-4.1.0/src/ci/MEDfileCompatibility.c 2021-12-03 09:35:30.676827162 +0100 ++++ med-4.1.0-new/src/ci/MEDfileCompatibility.c 2021-12-03 09:33:26.292942149 +0100 +@@ -71,7 +71,7 @@ MEDfileCompatibility(const char* const f + _hversionMMR=10000*_hmajeur+100*_hmineur+_hrelease; + /* ISCRUTE(_hversionMMR); */ + /* ISCRUTE(HDF_VERSION_NUM_REF); */ +- if ( (_hversionMMR >= HDF_VERSION_NUM_REF) && (_hmineur == HDF_VERSION_MINOR_REF) ) *hdfok = MED_TRUE; ++ if (_hversionMMR >= HDF_VERSION_NUM_REF) *hdfok = MED_TRUE; + + /* TODO : Vérifier si la version mineure HDF du fichier est supérieure + à la version mineure de la bibliothèque HDF utilisée : +@@ -113,7 +113,7 @@ MEDfileCompatibility(const char* const f + #if MED_NUM_MAJEUR != 4 + #error "Don't forget to update the test version here when you change the major version of the library !" + #endif +-#if H5_VERS_MINOR > 10 ++#if H5_VERS_MINOR > 12 + #error "Don't forget to check the compatibility version of the library, depending on the internal hdf model choice !" + #error "Cf. _MEDfileCreate ..." + #endif +diff -rupN med-4.1.0/src/hdfi/_MEDattributeNumWrByName.c med-4.1.0-new/src/hdfi/_MEDattributeNumWrByName.c +--- med-4.1.0/src/hdfi/_MEDattributeNumWrByName.c 2020-03-11 10:36:37.000000000 +0100 ++++ med-4.1.0-new/src/hdfi/_MEDattributeNumWrByName.c 2021-12-03 09:33:08.851958696 +0100 +@@ -68,7 +68,7 @@ med_err _MEDattributeNumWrByName(med_idt + + if ( (_attid=H5Aopen_by_name( pid, path, attname, H5P_DEFAULT, H5P_DEFAULT )) >= 0 ) { + +- if ( H5Oget_info( pid, &_oinfo ) <0) { ++ if ( H5Oget_info( pid, &_oinfo, H5O_INFO_ALL ) <0) { + MED_ERR_(_ret,MED_ERR_CALL,MED_ERR_API,"H5Oget_info"); + goto ERROR; + } +diff -rupN med-4.1.0/src/hdfi/_MEDattributeNumWr.c med-4.1.0-new/src/hdfi/_MEDattributeNumWr.c +--- med-4.1.0/src/hdfi/_MEDattributeNumWr.c 2020-03-11 10:36:37.000000000 +0100 ++++ med-4.1.0-new/src/hdfi/_MEDattributeNumWr.c 2021-12-03 09:33:11.840955852 +0100 +@@ -77,7 +77,7 @@ med_err _MEDattributeNumWr(med_idt pid, + + if ( (_attid=H5Aopen( pid, attname, H5P_DEFAULT )) >= 0 ) { + +- if ( H5Oget_info( pid, &_oinfo ) <0) { ++ if ( H5Oget_info( pid, &_oinfo, H5O_INFO_ALL ) <0) { + MED_ERR_(_ret,MED_ERR_CALL,MED_ERR_API,"H5Oget_info"); + goto ERROR; + } +diff -rupN med-4.1.0/src/hdfi/_MEDcheckAttributeStringFunc.c med-4.1.0-new/src/hdfi/_MEDcheckAttributeStringFunc.c +--- med-4.1.0/src/hdfi/_MEDcheckAttributeStringFunc.c 2020-03-11 10:36:37.000000000 +0100 ++++ med-4.1.0-new/src/hdfi/_MEDcheckAttributeStringFunc.c 2021-12-03 09:33:14.266953546 +0100 +@@ -40,7 +40,7 @@ med_err _MEDcheckAttributeStringFunc(med + oinfo.type=H5G_LINK; + break; + case H5L_TYPE_HARD: +- if ( H5Oget_info_by_name( id, lname, &oinfo, H5P_DEFAULT ) <0) { ++ if ( H5Oget_info_by_name( id, lname, &oinfo, H5O_INFO_ALL, H5P_DEFAULT ) <0) { + MED_ERR_(_ret,MED_ERR_CALL,MED_ERR_API,"H5Oget_info_by_name"); + SSCRUTE(lname); + } +diff -rupN med-4.1.0/src/hdfi/_MEDchecknSublinkFunc.c med-4.1.0-new/src/hdfi/_MEDchecknSublinkFunc.c +--- med-4.1.0/src/hdfi/_MEDchecknSublinkFunc.c 2020-03-11 10:36:36.000000000 +0100 ++++ med-4.1.0-new/src/hdfi/_MEDchecknSublinkFunc.c 2021-12-03 09:33:16.487951437 +0100 +@@ -41,7 +41,7 @@ med_err _MEDchecknSublinkFunc(med_idt id + oinfo.type=H5G_LINK; + break; + case H5L_TYPE_HARD: +- if ( H5Oget_info_by_name( id, lname, &oinfo, H5P_DEFAULT ) <0) { ++ if ( H5Oget_info_by_name( id, lname, &oinfo, H5O_INFO_ALL, H5P_DEFAULT ) <0) { + MED_ERR_(_ret,MED_ERR_CALL,MED_ERR_API,"H5Oget_info_by_name"); + SSCRUTE(lname); + } +diff -rupN med-4.1.0/src/hdfi/_MEDdatagroupExist.c med-4.1.0-new/src/hdfi/_MEDdatagroupExist.c +--- med-4.1.0/src/hdfi/_MEDdatagroupExist.c 2020-03-11 10:36:37.000000000 +0100 ++++ med-4.1.0-new/src/hdfi/_MEDdatagroupExist.c 2021-12-03 09:33:18.742949298 +0100 +@@ -45,7 +45,7 @@ med_err _MEDdatagroupExist(const med_idt + + case H5L_TYPE_HARD: + *isasoftlink = MED_FALSE; +- if ( H5Oget_info_by_name( gid, datagroupname, &_oinfo, H5P_DEFAULT ) <0) { ++ if ( H5Oget_info_by_name( gid, datagroupname, &_oinfo, H5O_INFO_ALL, H5P_DEFAULT ) <0) { + MED_ERR_(_ret,MED_ERR_CALL,MED_ERR_API,"H5Oget_info_by_name"); + SSCRUTE( datagroupname); + } +diff -rupN med-4.1.0/src/hdfi/_MEDdatasetExist.c med-4.1.0-new/src/hdfi/_MEDdatasetExist.c +--- med-4.1.0/src/hdfi/_MEDdatasetExist.c 2020-03-11 10:36:37.000000000 +0100 ++++ med-4.1.0-new/src/hdfi/_MEDdatasetExist.c 2021-12-03 09:33:24.158944167 +0100 +@@ -47,7 +47,7 @@ med_err _MEDdatasetExist(const med_idt + + case H5L_TYPE_HARD: + *isasoftlink = MED_FALSE; +- if ( H5Oget_info_by_name( gid, datasetname, &_oinfo, H5P_DEFAULT ) <0) { ++ if ( H5Oget_info_by_name( gid, datasetname, &_oinfo, H5O_INFO_ALL, H5P_DEFAULT ) <0) { + MED_ERR_(_ret,MED_ERR_CALL,MED_ERR_API,"H5Oget_info_by_name"); + SSCRUTE( datasetname); + } +diff -rupN med-4.1.0/src/hdfi/_MEDfileCreate.c med-4.1.0-new/src/hdfi/_MEDfileCreate.c +--- med-4.1.0/src/hdfi/_MEDfileCreate.c 2021-12-03 09:35:30.677827161 +0100 ++++ med-4.1.0-new/src/hdfi/_MEDfileCreate.c 2021-12-03 09:32:31.894994147 +0100 +@@ -159,7 +159,7 @@ med_idt _MEDfileCreate(const char * cons + * En HDF5-1.10.0p1 cela n'a aucun effet ! + * Un test autoconf permet de fixer un intervalle de version HDF à MED. + */ +-#if H5_VERS_MINOR > 10 ++#if H5_VERS_MINOR > 12 + #error "Don't forget to change the compatibility version of the library !" + #endif + +diff -rupN med-4.1.0/src/hdfi/_MEDfileOpen.c med-4.1.0-new/src/hdfi/_MEDfileOpen.c +--- med-4.1.0/src/hdfi/_MEDfileOpen.c 2021-12-03 09:35:30.677827161 +0100 ++++ med-4.1.0-new/src/hdfi/_MEDfileOpen.c 2021-12-03 09:32:31.894994147 +0100 +@@ -72,7 +72,7 @@ med_idt _MEDfileOpen(const char * const + + • The creation order tracking property, H5P_CRT_ORDER_TRACKED, has been set in the group creation property list (see H5Pset_link_creation_order). + */ +-#if H5_VERS_MINOR > 10 ++#if H5_VERS_MINOR > 12 + #error "Don't forget to change the compatibility version of the library !" + #endif + /* L'avantage de bloquer le modèle interne HDF5 +diff -rupN med-4.1.0/src/hdfi/_MEDlinkObjs.c med-4.1.0-new/src/hdfi/_MEDlinkObjs.c +--- med-4.1.0/src/hdfi/_MEDlinkObjs.c 2020-03-11 10:36:37.000000000 +0100 ++++ med-4.1.0-new/src/hdfi/_MEDlinkObjs.c 2021-12-03 09:33:21.096947067 +0100 +@@ -62,7 +62,7 @@ med_err _MEDlinkobjs(med_idt id,const ch + sur un lien hard + Sur un lien soft H5O_TYPE_UNKNOWN + */ +- if ( H5Oget_info_by_name( id, lname, &oinfo, H5P_DEFAULT ) <0) { ++ if ( H5Oget_info_by_name( id, lname, &oinfo, H5O_INFO_ALL, H5P_DEFAULT ) <0) { + MED_ERR_(_ret,MED_ERR_CALL,MED_ERR_API,"H5Oget_info_by_name"); + SSCRUTE(lname); + } +diff -rupN med-4.1.0/src/hdfi/_MEDmemFileOpen.c med-4.1.0-new/src/hdfi/_MEDmemFileOpen.c +--- med-4.1.0/src/hdfi/_MEDmemFileOpen.c 2021-12-03 09:35:30.678827160 +0100 ++++ med-4.1.0-new/src/hdfi/_MEDmemFileOpen.c 2021-12-03 09:32:31.894994147 +0100 +@@ -434,7 +434,7 @@ med_idt _MEDmemFileOpen(const char * con + goto ERROR; + } + +-#if H5_VERS_MINOR > 10 ++#if H5_VERS_MINOR > 12 + #error "Don't forget to change the compatibility version of the library !" + #endif + if ( H5Pset_libver_bounds( _fapl, H5F_LIBVER_18, H5F_LIBVER_18) ) { +diff -rupN med-4.1.0/src/hdfi/_MEDparFileCreate.c med-4.1.0-new/src/hdfi/_MEDparFileCreate.c +--- med-4.1.0/src/hdfi/_MEDparFileCreate.c 2021-12-03 09:35:30.678827160 +0100 ++++ med-4.1.0-new/src/hdfi/_MEDparFileCreate.c 2021-12-03 09:32:31.894994147 +0100 +@@ -64,7 +64,7 @@ med_idt _MEDparFileCreate(const char * c + * En HDF5-1.10.0p1 cela n'a aucun effet ! + * Un test autoconf permet de fixer un intervalle de version HDF à MED. + */ +-#if H5_VERS_MINOR > 10 ++#if H5_VERS_MINOR > 12 + #error "Don't forget to change the compatibility version of the library !" + #endif + +diff -rupN med-4.1.0/src/hdfi/_MEDparFileOpen.c med-4.1.0-new/src/hdfi/_MEDparFileOpen.c +--- med-4.1.0/src/hdfi/_MEDparFileOpen.c 2021-12-03 09:35:30.679827159 +0100 ++++ med-4.1.0-new/src/hdfi/_MEDparFileOpen.c 2021-12-03 09:32:31.894994147 +0100 +@@ -55,7 +55,7 @@ med_idt _MEDparFileOpen(const char * con + MED_ERR_(_fid,MED_ERR_INIT,MED_ERR_PROPERTY,MED_ERR_PARALLEL_MSG); + goto ERROR; + } +-#if H5_VERS_MINOR > 10 ++#if H5_VERS_MINOR > 12 + #error "Don't forget to change the compatibility version of the library !" + #endif + if ( H5Pset_libver_bounds( _fapl, H5F_LIBVER_18, H5F_LIBVER_18 ) ) { +diff -rupN med-4.1.0/tools/medimport/2.3.6/_MEDconvertStringDatasets.c med-4.1.0-new/tools/medimport/2.3.6/_MEDconvertStringDatasets.c +--- med-4.1.0/tools/medimport/2.3.6/_MEDconvertStringDatasets.c 2020-03-11 10:36:40.000000000 +0100 ++++ med-4.1.0-new/tools/medimport/2.3.6/_MEDconvertStringDatasets.c 2021-12-03 09:34:42.715870908 +0100 +@@ -52,7 +52,7 @@ med_err _MEDconvertStringDatasets(med_id + oinfo.type=(H5O_type_t) H5G_LINK; + break; + case H5L_TYPE_HARD: +- if ( H5Oget_info_by_name( id, lname, &oinfo, H5P_DEFAULT ) <0) { ++ if ( H5Oget_info_by_name( id, lname, &oinfo, H5O_INFO_ALL, H5P_DEFAULT ) <0) { + MED_ERR_(_ret,MED_ERR_CALL,MED_ERR_API,"H5Oget_info_by_name"); + SSCRUTE(lname); + }