Dear all, how can one generate the segmentation file (& modify it's format) without plotting images via ChromosomeExplorer? I have written my own method, and don't need the wast of processing time and space. Also, this would allow to get rid of the EBImage dependency (?).
Currently, I do >cbs <- CbsModel(cesN, ceSexRef) >fit(cbs, chromosomes=1:23, verbose=verbose) >ce <- ChromosomeExplorer(cbs) >process(ce, chromosomes=1:23, zooms=c(8), verbose=verbose) The "fit (cbs...)" step alone will not write out the segmentation. At least one zoom level is required here. Thanks fo rcomments, Michael. www.progenetix.net --~--~---------~--~----~------------~-------~--~----~ When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/aroma-affymetrix?hl=en -~----------~----~----~----~------~----~------~--~---
