By the way, I was using the script in the following page: http://groups.google.com/group/aroma-affymetrix/web/redundancy-tests
On Aug 12, 10:14 pm, tea <ywcu...@gmail.com> wrote: > Dear all, > > I ran aroma.affymetrix using two different custom CDF (one for entrez, > one fore refseq) > I was supposed to get different # of probesets. > For the entrez-based custom CDF, the total # of probesets shoud be > 11911+(probesets with the name AFFY...) > For the refseq-based custom CDF, the total # of probesets should be > 19692+(probesets with the name AFFY...) > However, I got the total # of probesets in the final RMA-summarized > expression matrix is 11980 > for both cases, which seemed to me that aroma.affymatrix might have > some setting for the maximum # of probesets in an calculation. I was > wondering how to set this parameter so that the expression index of > all the probesets are reported. > > Thank you very much. > > Sincerely, > > Yiwen Chen --~--~---------~--~----~------------~-------~--~----~ When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe from this group, send email to aroma-affymetrix-unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/aroma-affymetrix?hl=en -~----------~----~----~----~------~----~------~--~---
