Hi Lasse. Yes, the 'plm' mentioned on that page should be the 'plmTr' object (with mergeGroups=TRUE as you have) mentioned in the HuEx vignette:
http://groups.google.com/group/aroma-affymetrix/web/human-exon-array-analysis Hope that helps. Cheers, Mark On 26-Oct-09, at 9:20 PM, Lasse wrote: > > Thanks for sharing your code. > > I don't really understand - when getting the PLM for this instruction > are you supposed to set mergeGroups to true like this: > plm <- ExonRmaPlm(celSet, mergeGroups=TRUE) > > > -L > > > ------------------------------ Mark Robinson, PhD (Melb) Epigenetics Laboratory, Garvan Bioinformatics Division, WEHI e: m.robin...@garvan.org.au e: mrobin...@wehi.edu.au p: +61 (0)3 9345 2628 f: +61 (0)3 9347 0852 ------------------------------ --~--~---------~--~----~------------~-------~--~----~ When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe from this group, send email to aroma-affymetrix-unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/aroma-affymetrix?hl=en -~----------~----~----~----~------~----~------~--~---
