Hi, all: A quick question. I know after we extract frima score, I should use eBayes to do the following:
assume we have design matrix and contrast matrix, fit<-lmFit(exFirma,design) fit2<-contrasts.fit(fit,cont.matrix); fit2<-eBayes(fit2,proportion=p); the default setting for p is 0.01 that is for gene expression. Is 0.01 also a good guess for this firma score purpose? Or should I use 0.001 or some other values? Thanks! Sabrina
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