Hi!
We are interested in running a GISTIC analysis on the data we obtained
after segmentation with GLAD with Aroma, but there seems to be a problem
regarding the start and end postions of the segments, which apparently
do not match the physical positions of the markers file we are using for
GISTIC.
Does the segmentation reports the actual physical position of the first
and last markers or does it reports other nearby position?
Another question, I have a copy number file obtained from paired
analyisis in Partek Genomics Suite, and want to do the segmentation
using GLAD or CBS. How can I incorporate my CN file into the Aroma
pipeline to do the segmentation?
Thanks al lot!!
--
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