Hi, I don't know what system you have but a rough estimate is 3-10 minutes per array, which then is 1800-6000 minutes or 30-100 hours or 1.25-4.2 days for 600 arrays. It's not mega fast but it is also not that slow, especially not when you compare how long it takes to run the assay for 600 arrays. Also, note that there are some initial setup time for each new chip type, cf. FAQ. '2007-02-13: Why is aroma.affymetrix slow?' [http://aroma-project.org/FAQ].
Now, can *you* speed it up? Most likely. There are plenty of things you should be aware of and a few settings that you can adjust. See how-to page 'Improve processing time' [http://aroma-project.org/howtos/ImproveProcessingTime]. The "Estimate Time to Arrivial" (ETA) estimates in the probe summarization step are fairly accurate. /Henrik On Mon, Nov 22, 2010 at 4:42 AM, Yan Jiao <y.j...@ucl.ac.uk> wrote: > Dear all, > > > > I am running ds <- doCRMAv1("rawData", chipType="Mapping50K_Hind240"), it’s > been two days , still haven’t finished, I got 600 samples, how long does it > normally take? According to the information showing, estimated time:1984 > minutes, does this normally take this long? > > > > Many thanks > > > > yan > > > > > > > > ********************************************************************** > > This email and any files transmitted with it are confidential and > > intended solely for the use of the individual or entity to whom they > > are addressed. If you have received this email in error please notify > > the system manager (it.supp...@cancer.ucl.ac.uk). > > ********************************************************************** > > > > -- > When reporting problems on aroma.affymetrix, make sure 1) to run the latest > version of the package, 2) to report the output of sessionInfo() and > traceback(), and 3) to post a complete code example. > > > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group with website http://www.aroma-project.org/. > To post to this group, send email to aroma-affymetrix@googlegroups.com > To unsubscribe and other options, go to http://www.aroma-project.org/forum/ > -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/
