Hi Henrik, I have installed the latest aroma packages. Can you please advice how I can setup aroma so that it knows where to look for the correct cytoband information when drawing the cytoband in ChromosomeExplorer for displaying copy number segmentation results?
I realized that in the old aroma packages that I've been using it got the cytoband information from the GLAD package, which hasn't been updated since hg17. Thank you very much. Best, Kai > sessionInfo() R version 2.12.0 (2010-10-15) Platform: x86_64-unknown-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] aroma.cn_1.0.0 aroma.affymetrix_2.4.0 affxparser_1.22.0 [4] aroma.apd_0.2.0 R.huge_0.3.0 aroma.core_2.4.1 [7] aroma.light_1.22.0 matrixStats_0.4.3 R.rsp_0.7.1 [10] R.cache_0.5.2 R.filesets_1.1.4 digest_0.5.1 [13] R.utils_1.9.9 R.oo_1.8.3 R.methodsS3_1.2.1 -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to [email protected] To unsubscribe and other options, go to http://www.aroma-project.org/forum/
