Start a fresh R session, i.e. R --vanilla, and then see if first running
source("http://www.bioconductor.org/biocLite.R";);
biocLite("affxparser");
and then
source("http://aroma-project.org/hbLite.R";);
hbInstall("aroma.affymetrix");
solves it.
/Henrik
On Wed, Feb 1, 2012 at 11:10 PM, Fong <[email protected]> wrote:
> Hi,
>
> I am getting this strange error when I am trying to intall aroma.affymetrix
> with R 2.14 on a Linux machine. The commands I ran were:
>
>> source("http://aroma-project.org/hbLite.R";);
>> hbInstall("aroma.affymetrix");
>
>
> And the error I got was:
>
>> Updating packages: R.huge from repository 'DEFAULT'
>> 01/01. R.huge: v0.3.0, i.e. up to date.
>> Installing/updating: BIOC:affxparser (>= 1.22.0)
>> Repositories: BIOC
>> Package: affxparser (>= 1.22.0)
>> Tags:
>> Package to be installed: affxparser (>= 1.22.0)
>> Error in eval(expr, envir, enclos) :
>> You have an outdated biocLite() function. Run 'rm(biocLite)' and try
>> again.
>> In addition: Warning message:
>> In packageDescription(pkg) : no package 'affxparser' was found
>
>
> I tried to run 'rm(biocLite)', but it didn't solve the problem. It appears
> to not be able to find the affxparser package?
>
> Anyone have any ideas? Thanks,
>
> --
> When reporting problems on aroma.affymetrix, make sure 1) to run the latest
> version of the package, 2) to report the output of sessionInfo() and
> traceback(), and 3) to post a complete code example.
>
>
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> To post to this group, send email to [email protected]
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--
When reporting problems on aroma.affymetrix, make sure 1) to run the latest
version of the package, 2) to report the output of sessionInfo() and
traceback(), and 3) to post a complete code example.
You received this message because you are subscribed to the Google Groups
"aroma.affymetrix" group with website http://www.aroma-project.org/.
To post to this group, send email to [email protected]
To unsubscribe and other options, go to http://www.aroma-project.org/forum/
