| Hello, I have a short series of questions generally regarding the customization of Artemis. Rather than bombard the list with all my questions, I'll take them one at a time, as I expect they may be fairly involved. To note, I'm a bioinformatics guy and competent with both unix systems (I'm using Mac OS X), programming, and such. To begin, my ultimate aim here is to customize Artemis as a graphical, interactive front end (which it already is) for manually annotating in-house-generated genomic sequences stored in a remotely hosted relational database (what I'm hoping it can become :P) Ok, Question #1: Configuring the items in the Run menu. I've already read through http://www.sanger.ac.uk/Software/Artemis/v8/manual/runmenu.html, though I am confused by the apparent absence of any run_blastp or run_fasta scripts either within the Artemis container package (Mac OS X distribution, remember) or anywhere else on my machine. I did find a script called setup_dbs.sh within the package contents, which I initially thought might generate these run_ scripts, though which I am now guessing only create a local set of databases. *Should scripts such as run_blastp and run_fasta be generated during installation of Artemis, or are they generated during some sort of configuration step? *Is it possible that the Mac OS X distribution of Artemis lacks these scripts (and thus this functionality)? *Am I missing something obvious here? Any help would be appreciated. -Andrew Stewart -- Andrew Stewart Research Assistant, Genomics Team Navy Medical Research Center (NMRC) Biological Defense Research Directorate (BDRD) BDRD Annex 12300 Washington Avenue, 2nd Floor Rockville, MD 20852 email: [EMAIL PROTECTED] phone: 301-231-6700 Ext 270 |
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