Excellent, it works perfectly. For anyone else interested, you can
actually change the default colors for specified features, such as
CDS or whatever. You can even define colors for custom feature
types, ie: colour_of_COGHIT = 7, for example.
Now if I could only define colours based on attributes of a feature
other than its primary tag (for example, maybe based on score, or
source). Maybe a plugin is in order.
Thanks again Tim,
-Andrew
On Dec 6, 2006, at 11:35 AM, Tim Carver wrote:
Hi Andrew
For the MacOSX the options file (like the windows distribution) is
wrapped in the artemis.jar file. You can unwrap this, edit the
options file and create a new jar file.
Alternatively as you mention you can use the options flag or one
of the other option locations described here:
http://www.sanger.ac.uk/Software/Artemis/v8/manual/options-
chapt.html#OPTIONS-INTRO
The format is identical.
Regards
Tim
On 6/12/06 16:22, "Andrew Stewart" <[EMAIL PROTECTED]> wrote:
Hey Tim, thanks for the reply. What about for the Mac OSX
distribution, where the options file appears to be located within
the application package itself (though within there I can't seem
to find it)?
Can the -options argument passed at the command line still
specify a set of options to override the default ones? If so,
would the format of this new options file be similar to that found
in the options file of, say, a unix distribution of Artemis?
Thanks,
Andrew
On Dec 6, 2006, at 3:09 AM, Tim Carver wrote:
Hi Andrew
The colours and the default colours for features are defined in
the ‘etc/options’ file in the distribution.
This gives you some more on this:
http://www.sanger.ac.uk/Software/Artemis/v8/manual/
concepts.html#CONCEPTS-COLOUR
Regards
Tim
On 5/12/06 22:47, "Andrew Stewart" <[EMAIL PROTECTED]> wrote:
Some features are drawn in Artemis with a certain color,
presumably determined by the primary_tag or other attribute,
while other features can override the color drawn (or include
one if none appears by default) by setting the color tag on the
given feature.
Is there some table that determines the default colors
associated with a given feature/attribute, and is this table
accessible (either through the Artemis interface or through some
configuration file) or is it more or less hard coded into the
Artemis source code?
Thanks!
-Andrew
--
Andrew Stewart
Research Assistant, Genomics Team
Navy Medical Research Center (NMRC)
Biological Defense Research Directorate (BDRD)
BDRD Annex
12300 Washington Avenue, 2nd Floor
Rockville, MD 20852
email: [EMAIL PROTECTED]
phone: 301-231-6700 Ext 270
_______________________________________________
Artemis-users mailing list
Artemis-users@sanger.ac.uk
http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
--
Andrew Stewart
Research Assistant, Genomics Team
Navy Medical Research Center (NMRC)
Biological Defense Research Directorate (BDRD)
BDRD Annex
12300 Washington Avenue, 2nd Floor
Rockville, MD 20852
email: [EMAIL PROTECTED]
phone: 301-231-6700 Ext 270
--
Andrew Stewart
Research Assistant, Genomics Team
Navy Medical Research Center (NMRC)
Biological Defense Research Directorate (BDRD)
BDRD Annex
12300 Washington Avenue, 2nd Floor
Rockville, MD 20852
email: [EMAIL PROTECTED]
phone: 301-231-6700 Ext 270
_______________________________________________
Artemis-users mailing list
Artemis-users@sanger.ac.uk
http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
