Hello,
I'm trying to compile Artemis V9 via ant. This is my buildfile.xml:
<project name="Artemis" default="build" basedir=".">
<description>Artemis V9</description>
<property name="srcdir" location="${basedir}" />
<property name="jardir" location="${basedir}/lib" />
<property name="apidir" location="${basedir}/api" />
<property name="package" value="uk.ac.sanger" />
<property name="main" value="$
{package}.artemis.components.ArtemisMain" />
<path id="buildClassPath">
<pathelement location="${jardir}/biojava.jar" />
<pathelement location="${jardir}/chado-14-interface.jar" />
<pathelement location="${jardir}/jakarta-regexp-1.2.jar" />
<pathelement location="${jardir}/jemAlign.jar" />
<pathelement location="${jardir}/jobcontrol.jar" />
<pathelement location="${jardir}/macos.jar" />
<pathelement location="${jardir}/
postgresql-8.1-407.jdbc2ee.jar" />
<pathelement location="${jardir}/retrotranslator-
runtime-1.1.0.jar" />
<pathelement location="${jardir}/j2ssh/commons-logging.jar" />
<pathelement location="${jardir}/j2ssh/j2ssh-artemis-
plugin.jar" />
<pathelement location="${jardir}/j2ssh/j2ssh-core.jar" />
<pathelement location="${jardir}/ibatis/cglib-
nodep-2.2_beta1.jar" />
<pathelement location="${jardir}/ibatis/ibatis-2.3.0.677.jar" />
<pathelement location="${jardir}/ibatis/log4j-1.2.14.jar" />
</path>
<target name="build" description="Compiles the code">
<javac srcdir="${srcdir}"
classpathref="buildClassPath" />
</target>
</project>
But it won't compile. I always get the following errors:
build:
[javac] Compiling 290 source files
[javac] /Users/oliver/Documents/workspaceUVIC/ArtemisSource/
artemis/uk/ac/sanger/artemis/ExternalProgramUtils.java:69: cannot
access uk.ac.sanger.util.AbstractPropertyChangeable
[javac] file uk/ac/sanger/util/AbstractPropertyChangeable.class
not found
[javac] new
uk.ac.sanger.jcon.job.JobBatchImpl (administrator.getExecutableById
(1));
[javac] ^
[javac] /Users/oliver/Documents/workspaceUVIC/ArtemisSource/
artemis/uk/ac/sanger/artemis/ExternalProgramUtils.java:83: cannot
access uk.ac.sanger.sql.MutableNestedSetTreeNode
[javac] file uk/ac/sanger/sql/MutableNestedSetTreeNode.class not
found
[javac] new
uk.ac.sanger.jcon.job.JobBatchImpl (executable);
[javac] ^
[javac] /Users/oliver/Documents/workspaceUVIC/ArtemisSource/
artemis/uk/ac/sanger/artemis/ExternalProgramUtils.java:85: cannot
access uk.ac.sanger.util.PropertyChangeable
[javac] file uk/ac/sanger/util/PropertyChangeable.class not found
[javac] job.setStatus
(status_dao.readStatusById ( uk.ac.sanger.jcon.job.Status.WAITING));
[javac] ^
[javac] /Users/oliver/Documents/workspaceUVIC/ArtemisSource/
artemis/uk/ac/sanger/artemis/ExternalProgramUtils.java:88:
incompatible types
[javac] found : java.lang.Object
[javac] required: java.lang.String
[javac] final String input_file_name =
sequence_file_names.elementAt (i);
[javac]
^
[javac] Note: Some input files use or override a deprecated API.
[javac] Note: Recompile with -Xlint:deprecation for details.
[javac] Note: Some input files use unchecked or unsafe operations.
[javac] Note: Recompile with -Xlint:unchecked for details.
[javac] 4 errors
BUILD FAILED
I already searched for the class
uk.ac.sanger.util.AbstractPropertyChangeable, but I didn't find it in
the source or in one of the jar-files ...
What I'm doing wrong? Can anyone help me?
Cheers
Oliver
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