Hi, If it's only a quick and early screening without any gene prediction Blastxtract (found in pubmed), can manage, search and graphically visualise pre-computed blastx/fastx results of genomic sequence, once installed.
Marcus On Mon, 2007-06-25 at 17:03 +0200, Jack van de Vossenberg wrote: > Dear all, > > I am not sure if this came up already, but I have a question. If it cannot be > done I'll make it > a feature request. > > We have a 454 genome sequence, which is fragmented into many contigs. We used > a fasta file of > all contigs to start genome annotation. Artemis was used to determine ORFs. > Unfortunately some ORFs cross the contig border to the next (random position) > contig. This makes > annotation, especially automated blasts, more difficult, and sometimes we > miss info. Is there a > way to tell Artemis not to cross contig borders while defining ORFs? If it is > not possible I > request an option for this for future releases ;) I think that more and more > people will have > fragmented genome data for quick/early screening. > > Cheers, Jack > > _______________________________________________ > Artemis-users mailing list > Artemis-users@sanger.ac.uk > http://lists.sanger.ac.uk/mailman/listinfo/artemis-users _______________________________________________ Artemis-users mailing list Artemis-users@sanger.ac.uk http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
