I wrote a little tool in perl that will traverse a sequence file and add \color= tags to any features that meet various criteria specified at the command line. It can color-tag based on the feature type, the value of a specific tag on the feature (exact or partial string matches), or based on a score range. It uses the Graphics::ColorNames perl module to translate any of 700 English color names into the appropriate Artemis-readable RGB value. It's pretty simple to use, with a typical syntax like...
% art-color.pl --type tRNA=blue SEQUENCEFILE Or % art-color.pl --tag green(score<1e-5) SEQUENCEFILE You can remove all color tags from a file by throwing it the --strip tag (or its alias --bleach, just for humor sake :P) Anyway, if anyone wants a copy, shoot me an email and I'll be happy to share. If I get a lot of requests for it I'll throw it up on my sourceforge site. Cheers, Andrew _______________________________________________ Artemis-users mailing list Artemis-users@sanger.ac.uk http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
