Hi, I am trying to get Artemis v9 set up on a networked Unix computer (or at least co-ordinate with our IT people to do this). I have it running locally on a stand-alone but we want to make it more widely available. I now have Artemis runnng but still have some problems.
Firstly, I get the messages log4j:WARN No appenders could be found for logger (uk.ac.sanger.artemis.ExternalProgram0. log4j:WARN Please initialize the log4j system properly. Due to our firewire, we can not set up the program to access any external sites so is there a way to remove this message? Secondly I am trying to get blast searches to run. We have local databases set up under a directory that runs the local windows version of blast and the blastall is located in the standalone program version. I have edited options and run_blastp to these two address. When I start a Blastp search, the sequence file is written out to the blastp directory and the message 'blastp process received signal: 2 Ok' comes up but there is no .out file and it seems that blastp doesn't actually run. Is there any way to see error messages (ie if it can't find or access the database or blastall). I have checked for typos and access problems and cant see anything obvious. Finally, when I use control V to view selected feature, the dialogue box is put behind the main Artemis window, can I change the default some where to open it at the front. Apologies that there are so many questions but maybe someone out there has seen something like this before and knows the fixes? Thanks in advance Melanie Duffield Team Leader - Advanced DNA and Protein Technologies Dstl Rm 201, Bld 7a Porton Down Wilts SP4 0JQ +44 (0) 1980 614364 "This e-mail is intended for the recipient only. If you are not the intended recipient you must not use, disclose, distribute, copy, print, or rely upon this e-mail. If an addressing or transmission error has misdirected this e-mail, please notify the author by replying to this e-mail." "Recipients should note that all e-mail traffic on MOD systems is subject to monitoring and auditing."
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