Hi Jack If you need to split the file you can use the EMBOSS application splitsource:
http://emboss.sourceforge.net/apps/release/6.3/emboss/apps/splitsource.html (using -feature to retain feature information). Regards Tim On 12/2/10 3:27 PM, "j.vandevossenb...@science.ru.nl" <j.vandevossenb...@science.ru.nl> wrote: > Dear all, > > I am annotating a genome that is not closed. This is not unusual. In the > beginning I added the contigs from a fasta file and each contig got the > key "fasta_record". Unfortunately that is not the official Feature Key, > which gives me troubles when I export the data in EMBL or Genbank format. > The workaround is to rename this key to "source", but then all contigs are > seen as part of a contiguous sequence. > > This is not an unusual situation. Is there a key to identify stretches of > DNA as independent contigs? Or is there a way to export annotated Artemis > or EMBL/Genbank data (that have cost a lot of time to annotate) as > separated contigs without losing the annotation? > > Thanks for your help, > Jack > > > _______________________________________________ > Artemis-users mailing list > Artemis-users@sanger.ac.uk > http://lists.sanger.ac.uk/mailman/listinfo/artemis-users _______________________________________________ Artemis-users mailing list Artemis-users@sanger.ac.uk http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
