Hi Florent Actually I need to correct myself. I did fix this for GFF files. If you add the sequence to the end of the GFF file (see attached GFF changes to your example) then it should correctly offset the features to the correct sequence. For other file formats (EMBL, GenBank) this has not been implemented.
Regards Tim On 8/1/11 2:47 PM, "Tim Carver" <t...@sanger.ac.uk> wrote: > Hi Florent > > Apologies for not getting round to this. It has not been a priority here as > the EMBOSS application 'union' does this. I shall try and promote it up the > todo list. > > Regards > Tim > > > On 8/1/11 7:28 AM, "Florent Angly" <florent.an...@gmail.com> wrote: > >> Hi, >> I was trying Artemis to view some annotations I have in a multiFASTA and >> GFF3 file. In my use case, it is not common to have this type of data. I >> noticed a problem though, in that Artemis assigns all the GFF features >> to the first sequence in the FASTA file (see attached screenshot). After >> some research, I found that this issue has been reported 2-3 years ago: >> http://www.mail-archive.com/artemis-users@sanger.ac.uk/msg00468.html >> http://www.mail-archive.com/artemis-users@sanger.ac.uk/msg00401.html >> Any chance that this will be fixed? >> Regards, >> Florent >> >> PS/ I attached a subset of the contigs and annotations that illustrate >> the bug. >> >> _______________________________________________ >> Artemis-users mailing list >> Artemis-users@sanger.ac.uk >> http://lists.sanger.ac.uk/mailman/listinfo/artemis-users > > > > _______________________________________________ > Artemis-users mailing list > Artemis-users@sanger.ac.uk > http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
test.gff
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