On Tue, Mar 29, 2016 at 1:58 PM, Miro Moman <miromo...@gmail.com> wrote: > Hello, > > I am struggling to build Avogadro 1.1.1 from source in Ubuntu 15.10 x86-64. > > I run > > cmake ../ > -DEIGEN2_INCLUDE_DIR=/home/administrator/Downloads/avogadro/eigen-eigen-b23437e61a0 > > followed by make > > Everything seems to compile fine but there is an issue at linking stage: > > [100%] Building CXX object > avogadro/src/CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o > Linking CXX executable ../../bin/avogadro > /usr/bin/ld: CMakeFiles/avogadro-app.dir/main.cpp.o: undefined reference to > symbol 'XInitThreads' > /usr/lib/x86_64-linux-gnu/libX11.so.6: error adding symbols: DSO missing > from command line > collect2: error: ld returned 1 exit status > avogadro/src/CMakeFiles/avogadro-app.dir/build.make:1552: recipe for target > 'bin/avogadro' failed > make[2]: *** [bin/avogadro] Error 1 > CMakeFiles/Makefile2:2925: recipe for target > 'avogadro/src/CMakeFiles/avogadro-app.dir/all' failed > make[1]: *** [avogadro/src/CMakeFiles/avogadro-app.dir/all] Error 2 > Makefile:136: recipe for target 'all' failed > make: *** [all] Error 2 > > The reason for compiling from source is that Avogadro depends on > libopenbabel but that conflicts with my OpenBabel 2.3.90 installation. > I fixed something similar in GLEW compile recently, it would appear the Linux distros have changed linker behavior/library layouts in recent releases. I will see if I can reproduce and come up with a patch, I think this is transitive linking that used to work fine and you must now explicitly call out libraries you use symbols from.
Thanks, Marcus ------------------------------------------------------------------------------ Transform Data into Opportunity. Accelerate data analysis in your applications with Intel Data Analytics Acceleration Library. Click to learn more. http://pubads.g.doubleclick.net/gampad/clk?id=278785471&iu=/4140 _______________________________________________ Avogadro-Discuss mailing list Avogadro-Discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/avogadro-discuss
