I'm running avrdude 5.11.1 from MacPorts on Mac OS. It was fine when I was
using it with an Arduino Mega 2560, but when I switched to an Olimex AVR
ISP mkII programming an ATmega644A I started getting the error below. Same
if I use stk500v2. The same project with the same programmer works fine
with the same version of avrdude in Linux.

avrdude -vvvv -p ATmega644 -c avrispmkII -P usb -b 115200 -F -U
flash:w:build/controller.hex

avrdude: Version 5.11.1, compiled on Jul  2 2013 at 14:41:09
         Copyright (c) 2000-2005 Brian Dean, http://www.bdmicro.com/
         Copyright (c) 2007-2009 Joerg Wunsch

         System wide configuration file is "/opt/local/etc/avrdude.conf"
         User configuration file is "/Users/dan/.avrduderc"
         User configuration file does not exist or is not a regular file,
skipping

         Using Port                    : usb
         Using Programmer              : avrispmkII
         Overriding Baud Rate          : 115200
avrdude: usbdev_open(): Found AVRISP mkII, serno: 000200012345
avrdude: usbdev_open(): using read endpoint 0x82
         AVR Part                      : ATMEGA644
         Chip Erase delay              : 9000 us
         PAGEL                         : PD7
         BS2                           : PA0
         RESET disposition             : dedicated
         RETRY pulse                   : SCK
         serial program mode           : yes
         parallel program mode         : yes
         Timeout                       : 200
         StabDelay                     : 100
         CmdexeDelay                   : 25
         SyncLoops                     : 32
         ByteDelay                     : 0
         PollIndex                     : 3
         PollValue                     : 0x53
         Memory Detail                 :

                                  Block Poll               Page
          Polled
           Memory Type Mode Delay Size  Indx Paged  Size   Size #Pages MinW
 MaxW   ReadBack
           ----------- ---- ----- ----- ---- ------ ------ ---- ------
----- ----- ---------
           eeprom        65    10   128    0 no       2048    8      0
 9000  9000 0xff 0xff
                                  Block Poll               Page
          Polled
           Memory Type Mode Delay Size  Indx Paged  Size   Size #Pages MinW
 MaxW   ReadBack
           ----------- ---- ----- ----- ---- ------ ------ ---- ------
----- ----- ---------
           flash         33     6   256    0 yes     65536  256    256
 4500  4500 0xff 0xff
                                  Block Poll               Page
          Polled
           Memory Type Mode Delay Size  Indx Paged  Size   Size #Pages MinW
 MaxW   ReadBack
           ----------- ---- ----- ----- ---- ------ ------ ---- ------
----- ----- ---------
           lock           0     0     0    0 no          1    0      0
 9000  9000 0x00 0x00
                                  Block Poll               Page
          Polled
           Memory Type Mode Delay Size  Indx Paged  Size   Size #Pages MinW
 MaxW   ReadBack
           ----------- ---- ----- ----- ---- ------ ------ ---- ------
----- ----- ---------
           lfuse          0     0     0    0 no          1    0      0
 9000  9000 0x00 0x00
                                  Block Poll               Page
          Polled
           Memory Type Mode Delay Size  Indx Paged  Size   Size #Pages MinW
 MaxW   ReadBack
           ----------- ---- ----- ----- ---- ------ ------ ---- ------
----- ----- ---------
           hfuse          0     0     0    0 no          1    0      0
 9000  9000 0x00 0x00
                                  Block Poll               Page
          Polled
           Memory Type Mode Delay Size  Indx Paged  Size   Size #Pages MinW
 MaxW   ReadBack
           ----------- ---- ----- ----- ---- ------ ------ ---- ------
----- ----- ---------
           efuse          0     0     0    0 no          1    0      0
 9000  9000 0x00 0x00
                                  Block Poll               Page
          Polled
           Memory Type Mode Delay Size  Indx Paged  Size   Size #Pages MinW
 MaxW   ReadBack
           ----------- ---- ----- ----- ---- ------ ------ ---- ------
----- ----- ---------
           signature      0     0     0    0 no          3    0      0
0     0 0x00 0x00
                                  Block Poll               Page
          Polled
           Memory Type Mode Delay Size  Indx Paged  Size   Size #Pages MinW
 MaxW   ReadBack
           ----------- ---- ----- ----- ---- ------ ------ ---- ------
----- ----- ---------
           calibration    0     0     0    0 no          1    0      0
0     0 0x00 0x00

         Programmer Type : STK500V2
         Description     : Atmel AVR ISP mkII
         Programmer Model: AVRISP mkII
avrdude: Sent: . [03] . [90]
avrdude: usbdev_recv_frame(): usb_bulk_read(): Broken pipe
avrdude: stk500v2_recv_mk2: error in USB receive
avrdude: usbdev_send(): wrote -34 out of 2 bytes, err = Result too large
avrdude: stk500_send_mk2(): failed to send command to serial port
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