Hi,
I am thinking of writing a plugin that reformats a tiling array biossay set to
GFF (http://www.sanger.ac.uk/Software/formats/GFF/GFF_Spec.shtml) and WIG
format
(http://genome.ucsc.edu/goldenPath/help/wiggle.html). It seems the best way
would be to build an Export plugin. I have a had a look at the the example
plugins and it makes sense so far but I have some
questions. Any help or pointers to relevant docs or example/existing code would
great!
1) For each reporter there is an chromosome start and stop (imported as part of
the annotations for the reporter) and I will need to use this to construct the
file. How can I access reporter
information from a plugin?
2) Is it possible to set a custom Type (i.e non BASE) of the exported file so
it can be filtered e.g. GFF or WIG under the 'Files and directories' section ?
3) With an exported file is there a method to add comments to the 'description'
property? Can the text in these comments be hyperlinked?
4) Is it possible to add a custom 'Action' in 'Files and directories' so that
the output could exported directly to another database or uploaded to a genome
browser?
Thanks,
Steve
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