I got my BASE1 plug-in to work in BASE2. But when I tried to export the resulting bioassayset (as a basefile), I got this error: Permission denied: Not allowed to read Extra value type[id=2; name=imputed] My plug-in made an extra value column in the result set called "imputed". This was apparently causing some problems. After some debugging I found the problem in the permissions for the "Bioassay set file exporter". It had no permissions for the "Extra value type". I sat it to "-r---" and it worked. I guess this is a slip in the default configuration for the exporter since I see no need to deny this.
There is a lot of permissions in BASE2, is there a simple switch to completely turn them off. This would be nice for debugging purposes to quick confirm that the problem is permission related. In my debugging efforts I managed to configure eclipse with tomcat so I could set breakpoints and inspect the variables in runtime. I saw in another post that you in Lund did not do this, but for people not very familiar with the code I think this is a huge benefit, at least for saving time. I recommend it, but I spent some time to set eclipse up. I'll be back. Vegard Nygaard Software Engineer Department of Tumor Biology (Montebello) Rikshospitalet-Radiumhospitalet Medical Center 0310 Oslo Bioinformatics user support (NMC) Phone 0047 22935590 ------------------------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find problems? Stop. Now Search log events and configuration files using AJAX and a browser. Download your FREE copy of Splunk now >> http://get.splunk.com/ _______________________________________________ basedb-devel mailing list basedb-devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/basedb-devel
