Yes it is possible to run non-Java code and scripts from a plug-in. Your
code below is correctish ... are you sure you are running the script in
the correct directory in the server? The Affymetrix plug-in at
http://baseplugins.thep.lu.se/wiki/se.lu.thep.affymetrix uses external
programs to perform the calculations and the code in that plug-in should
be usable for you to copy. In function runBinary in
http://baseplugins.thep.lu.se/browser/trunk/se/lu/thep/affymetrix/RMAExpress.java
there is a call to Runtime.exec but with another list of arguments than
your example code.
Cheers,
Jari
Peter Mertens wrote:
> Dear list,
>
> is it possible to run a script from within the plugin?
>
> Then i have something like this in the "run" method:
>
> public void run(...)
> {
> ...
> Runtime runtime = Runtime.getRuntime ();
> Process process = runtime.exec("./scirpt PluginRunner arg1 arg2");
> int exitValue = process.waitFor();
> ...
> }
>
> Is this possible because?
> I keep getting errors and it's quite hard to get the exceptionmessages
> from the Runtime-error to the stacktrace.
>
> gr.
>
> Peter
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