Great, You are right, there are improvements needed to Plier and RMAExpress.
Yes, we appreciate help on developing and extending BASE and plug-ins. I'll grant you subversion write access to you. I'll contact you off-line with the details in the afternoon today. Cheers, Jari Robin Andersson wrote: > Hi, > > The current implementation of the affymetrix plugin Plier.java relies on > the Affymetrix Power Tools binary apt-probeset.summarize (analysis > option plier-mm) . However, none of the other options in > apt-probeset-summarize are made available for the user. > > I have created a new plugin called APT Summarize that extends Plier.java > with other options of transformations, PM intensity adjustments and > quantifications. Th plugin relies on AbstractExternalBinaryPlugin. > > Are you interested in me sharing the plugin with the BASE community? If > yes, how do I proceed? Can I add the plugin to a new branch of > (plug-ins) se.lu.thep.affymetrix? > > Best, > Robin Andersson > > --- > Robin Andersson, PhD student > Linnaeus Centre for Bioinformatics > Uppsala University > BMC, Box 598, SE-751 24 Uppsala, Sweden > phone: +46 18 471 66 86 (admin: 66 90) > fax: +46 18 471 66 98 > office: BMC, C6:315a > email: [EMAIL PROTECTED] <mailto:[EMAIL PROTECTED]> > http://www.lcb.uu.se/~robina/ > > > > > > ------------------------------------------------------------------------ > > ------------------------------------------------------------------------- > This SF.net email is sponsored by: Microsoft > Defy all challenges. Microsoft(R) Visual Studio 2005. > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > > > ------------------------------------------------------------------------ > > _______________________________________________ > basedb-devel mailing list > basedb-devel@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/basedb-devel -- Jari Hakkinen, PhD Complex Systems Division mailto:[EMAIL PROTECTED] Department of Theoretical Physics phone: +46 (0)46 2229347 Lund University fax: +46 (0)46 2229686 Solvegatan 14a, SE-223 62 Lund, Sweden http://www.thep.lu.se ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2005. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ basedb-devel mailing list basedb-devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/basedb-devel
