I have two different functions, one to return annotations with a
given type and a given value, another to return all annotations with
a given value (of any annotation type).
the code for the first is below:
> ItemQuery<AnnotationType> typeIq = AnnotationType.getQuery
> (Item.SAMPLE);
> typeIq.include(Include.SHARED); typeIq.setDistinct(true);
> ItemResultIterator<AnnotationType> typeIt = typeIq.iterate(dc);
> ArrayList<AnnotationSimpleRestriction> restArray = new ArrayList();
>
> while (typeIt.hasNext()) {
> AnnotationType at = typeIt.next();
> try {
> restArray.add(new AnnotationSimpleRestriction("ann",
> at,
> Operator.EQ, annotation, false));
> }
> catch (InvalidDataException ex) {
> try {
> restArray.add(new
> AnnotationSimpleRestriction("ann", at,
> Operator.EQ, Integer.parseInt(annotation), false));
> }
> catch (NumberFormatException ex2) {
> // System.out.println(ex.getMessage());
> }
> }
> }
>
>
> AnnotationSimpleRestriction[] restrictions = restArray.toArray(new
> AnnotationSimpleRestriction[restArray.size()]);
>
> ItemQuery<net.sf.basedb.core.Annotation> annoQuery =
> Annotation.getQuery();
> annoQuery.include(Include.SHARED); annoQuery.setDistinct(true);
>
> // restrict to one annotation type
> annoQuery.join(Hql.innerJoin("annotationType",
> Item.ANNOTATIONTYPE.getAlias()));
> annoQuery.restrict(
> Restrictions.eq(
> Hql.property(Item.ANNOTATIONTYPE.getAlias(), "name"),
> Expressions.string(type)
> )
> );
>
> annoQuery.restrict(
> Restrictions.or(restrictions)
> );
>
>
> ItemResultList<net.sf.basedb.core.Annotation> eList =
> annoQuery.list(dc);
The code for the second is identical apart from the join and the
extra restriction on annotationtype.name, however whilst the first
returns what I expect, the second brings back all the annotations
with the relevant value, as well as all others in the annotationSet.
Can anyone point out what I'm doing wrong?
thanks
-s
--
Seth Redmond
Scientific Programmer, VectorBase
Kafatos / Christophides Groups
Div. Cell and Molecular Biology
Imperial College, London
[EMAIL PROTECTED]
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