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I'm looking for a way to get
lots of data into a BASE2 repository from ArrayExpress and GEO so I can
run code against it and find interesting biology. I notice that MAGE-ML is an OMG standard that ArrayExpress supports for export and there is some Java code from MGED (http://www.mged.org/Workgroups/MAGE/mage-ml.html) already for reading files. Is there a plugin to get data into or out of BASE2 in MAGE-ML format? Is there a workaround using Tab2MAGE? I'm an experienced programmer (Java/Python/Perl/C++ etc) willing to contribute such plugins if it's feasible. Unfortunately, I'm a bit new to the microarray side of gene _expression_ (worked previously with SAGE data). I noticed several posts about MAGE-ML in BASE1 but it seems to have disappeared for MAGE2. I would really appreciate any guidance and I'm willing to contribute significantly to the codebase if this is feasible. Cheers, -Chris -- ------------------------------------------------- Chris Fjell Post-doctoral fellow CMDR (Centre for Microbial Diseases and Immunity Research) University of British Columbia Vancouver, BC, Canada [EMAIL PROTECTED] |
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