Hi Pawel, Check this post from July regarding importers -- everything in here still applies:
http://www.mail-archive.com/[EMAIL PROTECTED]/msg01487.html As far as exporters go, the only effort I am aware of currently is for a new MAGE-TAB format exporter which is being done by Philippe Rocca-Serra at the EBI and which (I think) will probably be available by the end of the summer, like the new MAGE-TAB importer. There is also an existing version of a Tab2Mage format exporter available from the plugins website (http://baseplugins.thep.lu.se/wiki/uk.ac.ebi.Tab2MageExporter) but I was not involved in this plugin and I am not sure whether it is currently maintained and compatible with current versions of BASE2. In the medium to longer term, MAGE-TAB will be replacing Tab2Mage at the EBI, which is partly why the development of Tab2Mage components is halted for now. Hope this helps a little. Cheers Micha ================================== Dr Micha M Bayer Bioinformatics Specialist Genetics Programme The Scottish Crop Research Institute Invergowrie Dundee DD2 5DA Scotland, UK Telephone +44(0)1382 562731 ext. 2309 Fax +44(0)1382 562426 http://www.scri.ac.uk/staff/michabayer ================================== > -----Original Message----- > From: [EMAIL PROTECTED] [mailto:basedb-devel- > [EMAIL PROTECTED] On Behalf Of Pawel Labaj > Sent: 04 August 2008 10:30 > To: basedb-devel@lists.sourceforge.net > Subject: [basedb-devel] Tab2Mage etc. > > Dear "All", > > > I am a member of Bioinformatics Group at BOKU University Vienna. > We are thinking about implementing BASE2 to our lab, but crucial for us > would be a possibility to export experiment information using Tab2Mage > format. > What is the state of development of new version of Tab2Mage > Exporter/Importer? (In some older posts I found that it should have > been ready around June) > > We also think that it can be useful to be able to export an experiment > summary as a tab-delimited file. Experiment summary containing > information about all steps from biosurce to bioassay. > Do you consider a such improvement? Or maybe it already exists > somewhere ? > > Best, > -- > Pawel Labaj > > Chair of Bioinformatics > Department of Biotechnology > Boku University Vienna > A-1190 Muthgasse 18 > Austria, Europe _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ SCRI, Invergowrie, Dundee, DD2 5DA. The Scottish Crop Research Institute is a charitable company limited by guarantee. Registered in Scotland No: SC 29367. Recognised by the Inland Revenue as a Scottish Charity No: SC 006662. DISCLAIMER: This email is from the Scottish Crop Research Institute, but the views expressed by the sender are not necessarily the views of SCRI and its subsidiaries. This email and any files transmitted with it are confidential to the intended recipient at the e-mail address to which it has been addressed. It may not be disclosed or used by any other than that addressee. If you are not the intended recipient you are requested to preserve this confidentiality and you must not use, disclose, copy, print or rely on this e-mail in any way. Please notify [EMAIL PROTECTED] quoting the name of the sender and delete the email from your system. Although SCRI has taken reasonable precautions to ensure no viruses are present in this email, neither the Institute nor the sender accepts any responsibility for any viruses, and it is your responsibility to scan the email and the attachments (if any). ------------------------------------------------------------------------- This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK & win great prizes Grand prize is a trip for two to an Open Source event anywhere in the world http://moblin-contest.org/redirect.php?banner_id=100&url=/ _______________________________________________ basedb-devel mailing list basedb-devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/basedb-devel
