Bonjour,
This is good news if you can develope this plugin and I have enought
datas on Base2 to test it :P
My contribution on the former plugin Tab2Mage was to add a feature to
manage pooling of samples (or extracts) and the possibility to have
several "Files[raw]" per RawBioAssay (ex : one cy3 and one cy5) because
we used nimblegen multi-color arrays.
Are you plan to manage that feature ?
Gildas
Le 01/09/2011 14:43, Pawel Sztromwasser a écrit :
Hallo,
I haven't been to the milestones page for a while, and I didn't know
that work on BASE 3 was in such an advanced state. Great job guys!
Support for sequencing data is excellent news for us.
Anyway, before it is released and before we are ready to migrate, we
will certainly have experiments to export. We could keep using the
Tab2Mage exporter this year, and the conversion script later, but I
think I'd prefer to start working on the plugin now when we have time,
develop against BASE 2 where we would have immediate use for it, and
port to BASE 3 later after we migrate. It will not be a big change I
hope.
Gildas, I have actually started developing the plugin. If you're
willing to contribute, I could send you the jar/code when it is
more-or-less ready for testing, so we could debug it on our sites
simultanously and make it bullet-proof;)
Helen, IMO it is better with one format than two, so I think removing
support for Tab2Mage (and providing conversion tools) is a move
forward. One thing I was wondering, if there are any plans for an
XML-based format for description of MA experiments? MAGE-ML is a bit
too complex I guess, but an XML Schema equivalent to the current
MageTab format would be favored by programmers and for programmatic
access, in comparison with the tab-delimited files.
Best wishes,
Pawel
Nicklas Nordborg wrote:
On 2011-09-01 09:15, Gildas Le Corguillé wrote:
Hello,
Our group still interesting in this kind of exporter. It was the main
reason why we decided to use Base. We are in a public lab so we like to
share :P
Last year, I repaired the existing Tab2Mage-exporter module for Base.
So if you need help, I can spend some time on that. But I'm not
necessarily a good developer ^^'
I think that a Mage-Tab exporter has to be developed by the BASE
community. We can provide space and user accounts on our
subversion+trac (baseplugins.thep.lu.se) if someone is interested to
start on this. Unfortunately we have no time to help with the actual
development. Of course, we'll try to answer questions and provide the
information that is necessary.
As a starting point, we try to collect and document the major API
changes in http://base.thep.lu.se/ticket/1603
My guess is that #1153 and #1597 are the major changes that cause
problems for the current Tab2Mage exporter.
/Nicklas
------------------------------------------------------------------------------
Special Offer -- Download ArcSight Logger for FREE!
Finally, a world-class log management solution at an even better
price-free! And you'll get a free "Love Thy Logs" t-shirt when you
download Logger. Secure your free ArcSight Logger TODAY!
http://p.sf.net/sfu/arcsisghtdev2dev
_______________________________________________
basedb-devel mailing list
basedb-devel@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/basedb-devel
------------------------------------------------------------------------------
Special Offer -- Download ArcSight Logger for FREE!
Finally, a world-class log management solution at an even better
price-free! And you'll get a free "Love Thy Logs" t-shirt when you
download Logger. Secure your free ArcSight Logger TODAY!
http://p.sf.net/sfu/arcsisghtdev2dev
_______________________________________________
basedb-devel mailing list
basedb-devel@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/basedb-devel
------------------------------------------------------------------------------
Doing More with Less: The Next Generation Virtual Desktop
What are the key obstacles that have prevented many mid-market businesses
from deploying virtual desktops? How do next-generation virtual desktops
provide companies an easier-to-deploy, easier-to-manage and more affordable
virtual desktop model.http://www.accelacomm.com/jaw/sfnl/114/51426474/
_______________________________________________
basedb-devel mailing list
basedb-devel@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/basedb-devel
