Hi again Here is the followup of my previous mail: Now I know how to parse a genepix file, I tried to create a Raw bioassay and to import a file to it.
This did not work, because of the Rgn R² column found in the genepix file: base cannot read correctly this field, and some errors are outputted. If I try to parameterize the things with: Rgn R2 \Rgn R.\ [Is it a regular expression ?] or with: Rgn R2 \Rgn R²\ I get a message: "Error: Column 'Rgn R?' not found in column headers." or "Error: Column 'Rgn R²' not found in column headers." I think it means that Base cannot read the ² character. The following is the configuration of my plugin: Block \Block\ Column \Column\ Data footer Data header Block\tColumn\tRow\tName\tID\tX\tY.* Data splitter \t Header (.+)=(.*) Ignore Max data columns 0 MetaGridX MetaGridY Min data columns 0 CV Background pixels \B Pixels\ Channel 1 background mean \B532 Mean\ Channel 1 background median \B532 Median\ Channel 1 background standard deviation \B532 SD\ Channel 1 foreground mean \F532 Mean\ Channel 1 foreground median \F532 Median\ Channel 1 foreground standard deviation \F532 SD\ Percent saturated pixels \F532 % Sat.\ Percent pixels within 1 standard deviation \% > B532+1SD\ Percent pixels within 2 standard deviations \% > B532+2SD\ Channel 2 background mean \B635 Mean\ Channel 2 background median \B635 Median\ Channel 2 background standard deviation \B635 SD\ Channel 2 foreground mean \F635 Mean\ Channel 2 foreground median \F635 Median\ Channel 2 foreground standard deviation \F635 SD\ Percent saturated pixels \F635 % Sat.\ Percent pixels within 1 standard deviation \% > B635+1SD\ Percent pixels within 2 standard deviations \% > B635+2SD\ Spot diameter \Dia.\ Foreground pixels \F Pixels\ Flags \Flags\ M value Standard deviation of ratios \Ratios SD\ Rgn R2 \Rgn R.\ Rgn ratio \Rgn Ratio\ Raw data type genepix Reporter ID \ID\ Row \Row\ Remove quotes true X \X\ Y \Y\ -- Emmanuel COURCELLE [EMAIL PROTECTED] L.I.P.M. (UMR CNRS-INRA 2594/441) tel (33) 5-61-28-54-50 B.P.52627 - 31326 CASTANET TOLOSAN Cedex - FRANCE ------ ------------------------------------------------------------------------- Using Tomcat but need to do more? Need to support web services, security? Get stuff done quickly with pre-integrated technology to make your job easier Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
