-----Original Message-----
From: [EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED] On Behalf Of Micha Bayer
Hi Micha,
>I have just finished writing one. The user uploads a zip file, a new
directory is created in the user's raw data directory (with >the same name
as the zip file) and the files are then unzipped in there. They are then
imported one by one as new
>RawBioAssay objects and at the end a new Experiment is created that has all
these hanging off it. At the moment it only
>works for non-Affy data though.
>To do this I had to hack the BASE source (plugin wasn't possible as far as
I can tell), and I am always reluctant to do that
>sort of thing because of versioning/upgrade issues (i.e. having to repeat
this every time a new version is out). I have
>modified >the JSP page that controls the menus and inserted a new item
there, and added a couple of JSP pages myself that >provide the UI for all
this.
>I did some more detailed testing yesterday and things worked fine but it's
all still pretty raw and probably full of bugs. I am
>happy to share the code with others though, or even make it a full
contribution to BASE if people are happy with it (perhaps >after it has been
gone over by some of the BASE team). I also think the exception handling
needs more work probably.
Base 2 has plans to have tab2mage import (importing experiments and
associated files) see Ticket #338 on base2 trac
http://base.thep.lu.se/ticket/338 system, and your zip file loader would
certaily help to in importing experiments from repositories and doing other
interesting stuff. We have this on our do list and would certainly
appreciate if you can share the code with us to help in this process.
Also, do you have plans to extend the functionality to non-affy data too?
Thanks and hope to read from you.
Dominic
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