Hi all.
Sorry to bother you again with this point, but I still does not 
understand everything...

I tried to define a new type, called "float colored": it is a float, 
colored with min value as 0, max as 0, mid as 5
I want to add 2 values to my data:
-2 * (ch(1) / ch(2))
-3 * (ch(1) / ch(2))
(Probably stupid for the analysis, but I just want to check the 
functionality)

So, I tried the JEP extra value calculator, specifying float coloured as 
a data type, and 2 * (ch(1) / ch(2))  as the expression. Then, I give a 
look to the data, and it works: the numbers are preceded with a little 
coloured square, the colour depends on the value.
Great, indeed.

So, I tried a second run, this time with 3 * (ch(1) / ch(2)) as 
expression. It got the following error message:

"The bioassay set already has extra values of the type: Extra value 
type[id=2824; name=float colored]"

This sounds very strange to me: If "float colored" is an "Extra Value 
Type", (this sounds to me as some data type, it's not right ?) why 
should it be applied ONLY one time ?

--------------------------------------------

Something else, which is probably a bug. When I go to 
Administrate/Types/Extra value types, I click on any extra type declared 
(for instance for editing the type), I get the following:

Base version    2.1 (build #2847; schema #20)
Web server      Apache Tomcat/5.5.20
Database Dialect        org.hibernate.dialect.PostgreSQLDialect
JDBC Driver     org.postgresql.Driver (version 8.1)
Java runtime    Java(TM) 2 Runtime Environment, Standard Edition 
(1.5.0_06-b05), Sun Microsystems Inc. <http://java.sun.com/>
Operating system        Linux i386 2.6.16-2-em64t-p4-smp
Memory  Total: 155.3 MB
Free: 30.9 MB
Max: 986.1 MB
Browser         Mozilla/5.0 (X11; U; Linux i686; fr; rv:1.8.1) Gecko/20061010 
Firefox/2.0
Error message 
/usr/local/apache-tomcat-5.5.20/work/Catalina/localhost/base2/org/apache/jsp/admin/extravaluetypes/view_005fextravaluetype_jsp.java
 
(Permission denied)
Stack trace     

...at java.io.FileOutputStream.open(Native Method)
...at java.io.FileOutputStream.(Unknown Source)
...at java.io.FileOutputStream.(Unknown Source)
...at org.apache.jasper.compiler.Compiler.generateJava(Compiler.java:140)
...at org.apache.jasper.compiler.Compiler.compile(Compiler.java:295)
...at org.apache.jasper.compiler.Compiler.compile(Compiler.java:276)
...at org.apache.jasper.compiler.Compiler.compile(Compiler.java:264)
...at 
org.apache.jasper.JspCompilationContext.compile(JspCompilationContext.java:563)

...at 
org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:305)
...at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:314)
...at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:264)
...at javax.servlet.http.HttpServlet.service(HttpServlet.java:802)
...at 
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:252)
...at 
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173)
...at 
org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:672)
...at 
org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:463)
...at 
org.apache.catalina.core.ApplicationDispatcher.doForward(ApplicationDispatcher.java:398)
...at 
org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:301)
...at 
org.apache.jasper.runtime.PageContextImpl.doForward(PageContextImpl.java:688)
...at 
org.apache.jasper.runtime.PageContextImpl.forward(PageContextImpl.java:658)
...at 
org.apache.jsp.admin.extravaluetypes.index_jsp._jspService(index_jsp.java:278)
...at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:97)
...at javax.servlet.http.HttpServlet.service(HttpServlet.java:802)
...at 
org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:334)
...at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:314)
...at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:264)
...at javax.servlet.http.HttpServlet.service(HttpServlet.java:802)
...at 
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:252)
...at 
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173)
...at 
net.sf.basedb.clients.web.servlet.CharacterEncodingFilter.doFilter(CharacterEncodingFilter.java:71)
...at 
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202)
...at 
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173)
...at 
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:213)
...at 
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:178)
...at 
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:126)
...at 
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:105)
...at 
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:107)
...at 
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:148)
...at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:869)
...at 
org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.processConnection(Http11BaseProtocol.java:664)
...at 
org.apache.tomcat.util.net.PoolTcpEndpoint.processSocket(PoolTcpEndpoint.java:527)
...at 
org.apache.tomcat.util.net.LeaderFollowerWorkerThread.runIt(LeaderFollowerWorkerThread.java:80)
...at 
org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:684)
...at java.lang.Thread.run(Unknown Source)

 

-- 
Emmanuel COURCELLE                [EMAIL PROTECTED]
L.I.P.M. (UMR CNRS-INRA 2594/441) tel (33) 5-61-28-54-50
B.P.52627 - 31326 CASTANET TOLOSAN Cedex - FRANCE
------



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