Hi Steve, Yes, we are planning to save the analysis made in TMEV back to BASE. The deadline for this feature to be included to BASE is not set yet. We have one guy assigned for this task but he has other things to do before he can start on TMEV.
I have started to transfer our hacks on TMEV code to the BASE-hacks trac pages, http://trac.thep.lu.se/trac/basehacks/. Currently the TMEV source code is there with modifications to the build.xml file to make it compile on my Mac (and hopefully on other Unix like environments). I'll try to add the changes in a few days (time permitting). Cheers, Jari Steve Taylor wrote: > Hi Jari, > >> BASE 1.2 plug-ins can be made to run in BASE 2. I have not tried to get >> a 1.2 plug-in to run in BASE 2 myself yet, but Johan Enell is doing the >> major coding for the BASE 1 plug-in executer. >> > > Look forward to hearing about it. > >> TMEV is already in BASE 2.2 If you click the third icon in the bioassay >> set view of an experiment you will initiate MeV. MeV is running as an >> Java web start application, and the bioassay set is automatically loaded >> at MeV start. You'll have to accept the certificate. You can perform >> analysis in MeV but the results cannot (currently) be stored back to >> BASE but saving to the local disk works. >> > > That sounds excellent. Are there plans to write the TMEV analysis results > back to the server and be able to visualise the analysis workflow in BASE in > the usual way? This would be a really good way of > capturing and keeping all the data in one place. I realise it may require > some more hacking of TMEV but it would be a fantastic feature... > >> I forgot to add our customized version of MeV to BASE-hacks page. I'll >> add the code to BASE-hacks. >> >> > > > Ok thanks. > > Steve > > > >> Cheers, >> >> Jari >> >> >> Steve Taylor wrote: >> >>> Hi, >>> >>> Can anyone confirm if it is possible to run BASE 1.2 plugins reliably in >>> BASE 2+? I noticed on the web site it says: >>> >>> "Plug-ins created for BASE 1.2 can be made to work in BASE 2 using the >>> Base1PluginExecuter plug-in (this is still in development phase)." >>> >>> Also is TMEV planned to be integrated into BASE2? On >>> >>> http://base.thep.lu.se/chrome/site/doc/admin/plugin_configuration/coreplugins.html >>> >>> it says: >>> >>> "MeV is a versatile microarray data analysis tool, incorporating >>> sophisticated algorithms for clustering, visualization, classification, >>> statistical analysis and biological theme discovery, >>> http://www.tm4.org. We use a modified version of MeV and provide >>> information about the changes at http://trac.thep.lu.se/tracs/BASE-hacks."; >>> >>> but the link doesn't work. >>> >>> Thanks for any advice, >>> >>> Steve >>> ------------------------------------------------------------------ >>> Medical Sciences Division >>> Weatherall Institute of Molecular Medicine/Sir William Dunn School >>> Oxford University >>> >>> >>> ------------------------------------------------------------------------- >>> Take Surveys. Earn Cash. Influence the Future of IT >>> Join SourceForge.net's Techsay panel and you'll get the chance to share your >>> opinions on IT & business topics through brief surveys-and earn cash >>> http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV >>> _______________________________________________ >>> The BASE general discussion mailing list >>> basedb-users@lists.sourceforge.net >>> unsubscribe: send a mail with subject "unsubscribe" to >>> [EMAIL PROTECTED] >>> >> > > > ------------------------------------------------------------------------- > Take Surveys. Earn Cash. Influence the Future of IT > Join SourceForge.net's Techsay panel and you'll get the chance to share your > opinions on IT & business topics through brief surveys-and earn cash > http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV > _______________________________________________ > The BASE general discussion mailing list > basedb-users@lists.sourceforge.net > unsubscribe: send a mail with subject "unsubscribe" to > [EMAIL PROTECTED] -- Jari Hakkinen, PhD Complex Systems Division mailto:[EMAIL PROTECTED] Department of Theoretical Physics phone: +46 (0)46 2229347 Lund University fax: +46 (0)46 2229686 Solvegatan 14a, SE-223 62 Lund, Sweden http://www.thep.lu.se ------------------------------------------------------------------------- Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys-and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
