Thanks Johan. I fully realise the lack of equivalents to clust_*.phtml in BASE2 - we were hoping to use the PNGs for our own purposes.
I already tried to export the parameter config from BASE1 and get tab-delimited text. I was just hoping I don't have to convert that to XML manually... Ah... now I get it - I can import the tab-delimited BASE1 config file in the very first step of the BASE2 plugin configuration... It was staring me in the face but I skipped that step. Now I'm just having some problems with the BASE1/BASE2 column names. At last google and the mailing list help me out: http://www.mail-archive.com/basedb-users@lists.sourceforge.net/msg00725.html It looks like I just have to create an extra value column called ratio1_2 cheers, Bob. Johan Enell writes: > Hj Bob, > > The clustering from Base1 will not work in Base2. Or more precisely, > you will be able to run the plugin but you wont be able to se the > result. The visualization page in Base1 was a specific php page for > that plugin and we didn't want a solution like that in Base2. > > > When you configure Base1 plugins you should always start of from a > base1 plugin configuration file. From the plugin page in Base1 you > will find an export link with each plugin. Use that file to configure > the Base1PluginExecuter. > > /Johan > > > 11 sep 2007 kl. 16.58 skrev Bob MacCallum: > > > > > Hi, > > > > I was trying to find out if base1's hierarchical clustering would > > run under > > base2 - and got to the point where I need to provide parameter > > settings as > > XML. I could spend an hour figuring this out by hand (e.g. from > > the examples > > on the BASE2 demo server) but I'm convinced there's an easier way. > > I've > > searched the plugin site for documentation. Could someone help > > please? > > > > Since the hierarchical clustering isn't on the BASE2 demo server, > > does that > > mean it doesn't work? > > > > We know that there won't be any display tools available in BASE2 > > for this, but > > we can work with the PNGs and assorted text files. > > > > many thanks, > > Bob. > > > > > > > > -- > > Bob MacCallum | VectorBase Developer | Kafatos/Christophides Groups | > > Division of Cell and Molecular Biology | Imperial College London | > > Phone +442075941945 | Email [EMAIL PROTECTED] > > > > ---------------------------------------------------------------------- > > --- > > This SF.net email is sponsored by: Microsoft > > Defy all challenges. Microsoft(R) Visual Studio 2005. > > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > > _______________________________________________ > > The BASE general discussion mailing list > > basedb-users@lists.sourceforge.net > > unsubscribe: send a mail with subject "unsubscribe" to > > [EMAIL PROTECTED] > > > ------------------------------------------------------------------------- > This SF.net email is sponsored by: Microsoft > Defy all challenges. Microsoft(R) Visual Studio 2005. > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > _______________________________________________ > The BASE general discussion mailing list > basedb-users@lists.sourceforge.net > unsubscribe: send a mail with subject "unsubscribe" to > [EMAIL PROTECTED] -- Bob MacCallum | VectorBase Developer | Kafatos/Christophides Groups | Division of Cell and Molecular Biology | Imperial College London | Phone +442075941945 | Email [EMAIL PROTECTED] ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2005. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
