Hmm, strange... And after nearly an hour of debugging and source code gazing I finally realised that another (2.8.x) BASE instance was running the import job!
I've had this problem before. I just need to set jobqueue.internal.enabled = false in the config and this type of problem will go away, right? (Because this other BASE instance doesn't need to run jobs.) So actually the default protocols work perfectly from the bulk import plugins. Sorry for any trouble! Nicklas Nordborg writes: > Bob MacCallum wrote: > > > > As an admin user, I created a new project, set the sampling and extraction > > default protocols. Then I ran the BioSource bulk importer - no probs. > > Then > > the Sample importer - no probs, all biosources linked to samples as > > expected. > > > > I was hoping from ticket 1112 that the project default sampling protocol > > would > > be attached to the samples, but unfortunately it did not seem to assign any > > protocol at all. > > It works fine in our tests. Have you activated the project? > > > /Nicklas > > ------------------------------------------------------------------------------ > _______________________________________________ > The BASE general discussion mailing list > basedb-users@lists.sourceforge.net > unsubscribe: send a mail with subject "unsubscribe" to > basedb-users-requ...@lists.sourceforge.net -- Bob MacCallum | VectorBase Developer | Kafatos/Christophides Groups | Division of Cell and Molecular Biology | Imperial College London | Phone +442075941945 | Email r.maccal...@imperial.ac.uk ------------------------------------------------------------------------------ _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to basedb-users-requ...@lists.sourceforge.net
