Louise Donnison wrote: > Hi > > We have some raw bioassays in an experiment and I am trying to work out > how to use the analysis plugins. > We can run the Formula intensity calculator Mean FG - Mean BG to create > a BioAssay set. > We can run the Filter plugin to filter out flagged values and the JEP > intensity transformer to set values. > > However, what I would like to do is if a spot is flagged (non 0), set > its value to the mean > of that spots reporters (flagged 0) across the whole experiment. > Calculate a mean of the channel 1 and channel2 values > for each reporter for non flagged reporters. > > Is that possible? I have been looking at the > JEP extra value calculator plugin but I am not sure how I can create > such a mean using that plugin
The JEP plug-ins are very simple and doesn't support means or other aggregated values. They can only work with the data for a single spot at a time. /Nicklas ------------------------------------------------------------------------------ This SF.net email is sponsored by: SourcForge Community SourceForge wants to tell your story. http://p.sf.net/sfu/sf-spreadtheword _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to basedb-users-requ...@lists.sourceforge.net
