Hi,
I am trying to get BASE 2.9.2 working with the APT 0.2 plugin on a
Testserver.
Envorinment Condition are as follows:
Windows XP Prof SP2, Tomcat 6, Affymetrix Powertools Version:
apt-1.10.1-20081103
In some cases the Conversion of .CEL files to Probeset Signal worked, but
most of the time I get the following error Message:
-----------------------------------------------------------------
Name Run plugin: APT Summarize plug-in
Description
Priority 5 (1 = highest, 10 = lowest)
Status Error: Unexpected exit of APT sub-process:
C:\Program Files\Tomcat
6.0\webapps\ROOT\plugins\APT\apt-probeset-summarize --cdf-file
CHO2a520638F.CDF --cel-files inputfiles.txt --out-dir C:\Program
Files\Tomcat 6.0\temp\APT Summarize plug-in\91 --analysis plier-mm
Exit value: 1.
Percent complete
100%
java.io.IOException: Unexpected exit of APT sub-process:
C:\Program Files\Tomcat
6.0\webapps\ROOT\plugins\APT\apt-probeset-summarize --cdf-file
CHO2a520638F.CDF --cel-files inputfiles.txt --out-dir C:\Program
Files\Tomcat 6.0\temp\APT Summarize plug-in\91 --analysis plier-mm
Exit value: 1.
at se.uu.lcb.APT.APTPlugin.runBinary(Unknown Source)
at se.uu.lcb.APT.AbstractExternalBinaryPlugin.run(Unknown Source)
at
net.sf.basedb.core.PluginExecutionRequest.invoke(PluginExecutionRequest.java:106)
at
net.sf.basedb.core.InternalJobQueue$JobRunner.run(InternalJobQueue.java:504)
at java.lang.Thread.run(Unknown Source)
-----------------------------------------------------------------
As I understand the apt-probeset-summarize.exe just returns an error. Is
there a possibility to further identify the problem?
Thanks for your support folks!
Philipp Kaiser
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