Hi all, Does anyone know the details about importing probeset annotations for Affymetrix chips?
I was able to import a couple of CDFs provided by the Affy web site, then I tried the "CSV importer x" (from LIMS->Array Designs menu), providing the CSV annotation file as input, which, again, I downloaded from Affy-web. However, it doesn't seem that the probeset IDs are complemented with the further information coming from the CSV. In fact, in the reporter section of the BASE UI, I cannot find essential columns such as GO accessions and labels, or KEGG IDs. How does the thing work? How does it work in general (I started with Affy, but later I will need to work with Illumina chips as well)? Moreover, I am trying to do that in order to use BASE as a single point storage for both visualizing the probeset annotations and accessing them from external Java programs. Can someone point me to the right API parts and documentation for doing that? Thanks in advance for any help. Marco. ------------------------------------------------------------------------------ The NEW KODAK i700 Series Scanners deliver under ANY circumstances! Your production scanning environment may not be a perfect world - but thanks to Kodak, there's a perfect scanner to get the job done! With the NEW KODAK i700 Series Scanner you'll get full speed at 300 dpi even with all image processing features enabled. http://p.sf.net/sfu/kodak-com _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to basedb-users-requ...@lists.sourceforge.net
