RobertCNelson: I am not using initramfs

After some experimentation I found a sort-of solution.

I removed the call to bone_capemgr from uEnv.txt, then decompiled 
/boot/dtbs/am335x-boneblack.dtb with

dtc -I dtb -O dts am335x-boneblack.dtb > am335x-boneblack.dts

then inserted the content of my overlay into am335x-boneblack.dts and 
recompiled with

dtc -O dtb -o am335x-boneblack.dtb -b o am335x-boneblack.dts

Now I get the RTC as I like at boot.

The question remains what's up with bone_capemgr and /lib/firmware at 
boot.  I'll ask on the Arch Arm forum.

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