Have you updated the device tree compiler ? Here, I'm assuming you simply
upgraded the kernel form an image that initially had 3.8.x installed . . .

http://www.embeddedhobbyist.com/2015/09/beaglebone-black-updating-device-tree-files/

On Sat, Jul 2, 2016 at 2:08 PM, <cwrseckf...@gmail.com> wrote:

>
> Running kernel 4.4 and trying to read a DS3234 clock on the second SPI
> port I can suppress the HDMI pins in uEnv.txt with:
>
> dtb=am335x-boneblack-emmc-overlay.dtb
>
> optargs=cape_disable=bone_capemgr.disable_partno=BB-BONELT-HDMI,BB-BONELT-HDMIN
>
> (uEnv.txt isn't loading the "universal overlay".)
>
> Loading BB-SPIDEV0 and BB-SPI1CLK then produces the expected
> /dev/spidev1.0,
> /dev/spidev1.1 and /dev/rtc1 devices.
>
> dmesg says:
> bone_capemgr bone_capemgr: part_number 'BB-SPI1CLK', version 'N/A'
> bone_capemgr bone_capemgr: slot #6: override
> bone_capemgr bone_capemgr: Using override eeprom data at slot 6
> bone_capemgr bone_capemgr: slot #6: 'Override Board Name,00A0,Override
> Manuf,BB-SPI1CLK'
> ds3234 spi2.0: Control Reg: 0x00
> ds3234 spi2.0: Ctrl/Stat Reg: 0x00
> ds3234 spi2.0: rtc core: registered ds3234 as rtc1
> bone_capemgr bone_capemgr: slot #6: dtbo 'BB-SPI1CLK-00A0.dtbo' loaded;
> overlay id #1
>
> However, there's no spi pingroup, and the relevant pins remain in mode 7
> not mode 3, and are unclaimed:
>
> pin 100 (44e10990.0) 00000027 pinctrl-single
> pin 101 (44e10994.0) 00000027 pinctrl-single
> pin 102 (44e10998.0) 00000027 pinctrl-single
> pin 103 (44e1099c.0) 00000027 pinctrl-single
>
> pin 100 (44e10990.0): (MUX UNCLAIMED) (GPIO UNCLAIMED)
> pin 101 (44e10994.0): (MUX UNCLAIMED) (GPIO UNCLAIMED)
> pin 102 (44e10998.0): (MUX UNCLAIMED) (GPIO UNCLAIMED)
> pin 103 (44e1099c.0): (MUX UNCLAIMED) (GPIO UNCLAIMED)
>
> and reading the clocks gives:
>
> quid ~ # hwclock -f /dev/rtc0 -r
> Sat Jul  2 21:00:10 2016  .954216 seconds
> quid ~ # hwclock -f /dev/rtc1 -r
> hwclock: ioctl(RTC_RD_TIME) to /dev/rtc1 to read the time failed: Invalid
> argument
> quid ~ #
>
> The clock overlay worked in 3.8, and I _think_ I've updated it correctly
> for
> 4.4.  Can anyone spot what I've missed?
>
> /*
> ** Dallas DS3234 RTC SPI driver test.
> **
> ** Virtual cape for SPI1 on connector pins P9.29 P9.31 P9.30 P9.28
> **
> ** Pin Identities.
> **
> ** SPI_1 names     : CS0,   DO,    DI,    CLK
> ** P9 pins         : 28,    29,    30,    31
> ** GPIO3 pins      : 17,    15,    16,    14
> ** Processor pins  : C12,   B13,   D12,   A13
> ** SRM table 15 ?? : 214,   210,   212,   218
> ** Pingroup labels : 103,   101,   ???    100
> ** Code offsets    : 0x19c, 0x194, 0x198, 0x190
> ** Base pin gpmc_ad0 has address 0x800 giving:
> **                 : 0x99c, 0x994, 0x998, 0x990
> ** TRM 9.3 (spi0)  : 0x95c, 0x954, 0x958, 0x950
> **
> ** Moved to kernel 4.x GPIO bank numbering.
> */
>
> /dts-v1/;
> /plugin/;
>
> / {
>     compatible = "ti,beaglebone", "ti,beaglebone-black";
>
>     /* identification */
>     part-number = "BB-SPI1CLK";
>     version = "00A0";
>
>     /* Resources */
>     exclusive-use =
>         /* Pin header */
>         "P9.31",    /* spi1_sclk */
>         "P9.29",    /* spi1_d0 */
>         "P9.30",    /* spi1_d1 */
>         "P9.28",    /* spi1_cs0 */
>         /* Hardware */
>         "spi1";
>
>     fragment@0 {
>         target = <&am33xx_pinmux>;
>         __overlay__ {
>             /* Default has all gpios released, mode uart1 */
>             pinctrl_spi1: pinctrl_spi1_pins {
>                 pinctrl-single,pins = <
>                     0x190 0x33 /* P9_31 = mcasp0_aclkx.spi1_sclk,
> INPUT_PULLUP | MODE3 */
>                     0x194 0x33 /* P9_29 = mcasp0_fsx.spi1_d0,
> INPUT_PULLUP  | MODE3 */
>                     0x198 0x13 /* P9_30 = mcasp0_axr0.spi1_d1,
> OUTPUT_PULLUP | MODE3 */
>                     0x19c 0x13 /* P9_28 = mcasp0_ahclkr.spi1_cs0,
> OUTPUT_PULLUP | MODE3 */
>                 >;
>             };
>         };
>     };
>
>     fragment@1 {
>         target = <&spi1>;
>         __overlay__ {
>             #address-cells = <1>;
>             #size-cells = <0>;
>             status           = "okay";
>             pinctrl-names    = "default";
>             pinctrl-0        = <&pinctrl_spi1>;
>             cs-gpios = <&gpio3 17 0>;  /* Is this needed ??? */
>             ds3234@0 {
>                 #address-cells = <1>;
>                 #size-cells = <0>;
>                 compatible = "ds3234";
>                 reg = <0>;
>                 spi-max-frequency = <200000>; /* Slowed for testing */
>                 /* spi-cpha ??? */
>             };
>         };
>     };
>
> };
>
>
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