The AM335x CPU has three PWM subsystems, each one containing an eQEP 
module. So three rotary encoders are supported by the hardware (speed and 
direction/position @ 100 MHz counters).

In order to measure speed only (no direction/speed) you can use the eCAP 
modules in two of that subsystems (the third one isn't wired to any header 
pin). Or you can use one of the four TIMER subsystems (24 MHz counters).

If you need a fourth direction/position sensor, there's a PRU firmeware in 
the BBBlue package.

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