Hi Jyoti,
Jyoti wrote:
How to upload any file and get results for that uploaded file through a
redirected URL, in perl/cgi
I mean to ask, for example, I upload a file which contains protein
sequences. Now I want blast results for that uploaded file in my server.
Can anyone help me with few lines of Code, so that I can upload any file
with any number of sequences and get the results as well when I click on
Blast Results button.
Specific site from where I shud get results is : (
http://blast.ncbi.nlm.nih.gov/Blast.cgi). Can see the homepage!!!
Anyone can also explain me in general terms....
Just help me to link a URL when I click a button OR directly get the results
on my page ( as same as that URL).
I'm afraid you'll have to describe your problem a bit better. You want
to upload a file to NCBI (i.e., not your server), let it do some kind of
processing, and then show its results in a web page?
Most of what you're asking is related to NCBI and Blast and NCBI has
provided an API to do things like this (I *think* -- I haven't used
their API in a long time). For example, go to here:
http://www.ncbi.nlm.nih.gov/entrez/query/static/eutils_help.html
And the first paragraph says,
"Entrez Programming Utilities are tools that provide access to Entrez
data outside of the regular web query interface and may be helpful for
retrieving search results for future use in another environment."
There's a lot of information there and you might want to go through it
first. I'm not sure if there are other API on their web site; you'll
have to check.
Once that's done, your results will be returned from their server and
having it show up on your server (presuming you have it set up already)
should be easy.
And as Dave said yesterday, most people on this list aren't
bioinformaticians so you should try to describe your problem in more
general terms.
Ray
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