Hi, I have to write my first Perl script . This scripts Searches for rare codons in nucleotide sequence . The nucleotide sequence is entered by the user in the format "ATTGCAATT.." and then the scripts breaks this sequence in the groups of three alphabets like ATT,GCA,ATT...so no.and then I have a list of the combinations and their probabilites like ATT (34.4) . I compare the breaked sequence against this list and print out the total that is the sum of all the similar combis Please suggest .
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