On 5/14/07, Tatiana Lloret Iglesias <[EMAIL PROTECTED]> wrote:
snip
my $status = system("d:\\blast\\bin\\blastall -p blastn -i $file -d $patDB
-o $workdir\\blast_$blast_file_id.txt");
snip
Just an unrelated note to make your life a little easier, Perl
automagically uses the right directory separator if you say
system("d:/blast/bin/blastall", "-p", "blastn", "-i", $file, ...);
That saves you from trying to make sure you have escaped all of the
backslashes escaped correctly.
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