On 7/20/07, [EMAIL PROTECTED] <[EMAIL PROTECTED]> wrote:
I've just recently begun using BioPerl. I've set up a local version of Blast, and am writing a script to automate the whole process. However, when using "$hit->strand()" to get the strand information from one of my hits, it sometimes returns an invalid subsequence. I've traced this back to tile_hsps() and the range() method. Has anyone had a similar problem? Any ideas on what it might be or how to fix it?
This has more to do with the specific modules you are using and you will probably be better served by asking this question on the BioPerl mailing list* rather than the Perl Beginners mailing list. However, if you can post a small program that exhibits the problem I am sure people here will be willing to help you track down the problem. * http://bioperl.org/mailman/listinfo/bioperl-l -- To unsubscribe, e-mail: [EMAIL PROTECTED] For additional commands, e-mail: [EMAIL PROTECTED] http://learn.perl.org/
