Jose,

Have you tried mucking with  wd'msgs'  ?  Using the following verb, I can 
refocus window between delays:

   countdown=. ''"_@:(<"0@:|.@:i.@:[ >@:((1!:2&2@:[ ] 6!:3@:] [ 
wd@:('msgs'"_))&.>/@:(|.@:[ , <@:])) ])
   10 countdown 1

Note the difference in behavior if one does the  wd'msgs'  AFTER the delay.  

   countdown=. ''"_@:(<"0@:|.@:i.@:[ >@:((1!:2&2@:[ ] 'msgs' wd@:[ 
6!:3@:])&.>/@:(|.@:[ , <@:])) ])
   10 countdown 1

-Dan
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