This is one of the reasons BibDesk has the "Open With Temporary Cite  
Keys" feature. If you search BibDesk's Help for Bookends or check  
Appendix A, you should find a link to this page:

http://bibdesk.sourceforge.net/manual/BibDesk%20Help_7.html#SEC30

On Jun 19, 2008, at 5:06 AM, Christiaan Hofman wrote:

> And of course there's nothing anyway can say other than "you obviously
> have invalid bibtex" based on this info. You can look at the bibtex
> source and try and fix it yourself by double-clicking the entry in the
> error panel.
>
> Christiaan
>
> On 19 Jun 2008, at 5:51 AM, James Howison wrote:
>
>> Just to be clear; another program is generating something it calls
>> BibTeX that BibDesk can't import?
>>
>> Probably helpful if you paste in the text it purports is bibtex, it
>> sounds like Bookends might be generating faulty bibtex?
>>
>> On Jun 18, 2008, at 11:38 PM, Shane Eastwood wrote:
>>
>>> I am getting this error, when exporting Bookends bibliograph in
>>> Bibtex
>>> format and then dragging to Bibdesk 1.3.12 (v940) window. i am not
>>> sure where the problem is coming from. Do you know how to fix the
>>> problem?
>>>
>>> By manually removing the first ',' on the first line of each
>>> reference
>>> entry, and then dragging into Bibdesk main window resolves the
>>> problem
>>> it appears. However how can i make it run properly?
>>>
>>> Please see  below:
>>>
>>> bibliography    26      syntax error     found ",", expected one of:
>>> number,
>>> name (entry type, key, field, or macro name), end of entry ("}" or
>>> ")") or quoted string ({...} or "...")
>>>
>>> Sincerely,
>>>
>>> Shango.
>>>
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>>
>>
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