Hi Norman,
On Thu, Feb 7, 2013 at 6:59 PM, Norman Pavelka <normanpave...@gmail.com> wrote: > Hi, > > I am sure many of you may have noticed already, but basically every > package in Bioc-devel that has a vignette (i.e. almost every package) > is currently issuing warnings in R CMD check: > http://www.bioconductor.org/checkResults/2.12/bioc-LATEST/ > > I ran some tests myself and it appears that in the latest version of > R-devel some changes have been introduced in R CMD build that causes > it not to copy the compiled PDF vignettes to inst\doc. R CMD build > returns only a silent warning such as: > > * creating vignettes ... OK > Warning in file.copy(c(vigns$docs, outfiles), doc_dir) : > problem copying > E:\biocbld\bbs-2.12-bioc\tmpdir\Rtmpq4jjoR\Rbuild93c202b5ca6\plgem\vignettes\plgem.pdf > to inst\doc\plgem.pdf: No such file or directory > > R CMD check then issues the following user-visible warning: > > * checking package vignettes in 'inst/doc' ... WARNING > Package vignette without corresponding PDF: > 'plgem.Rnw' > > Compiling my package from the same source but using the previous > version of R CMD build does not cause any problems, i.e. the vignette > PDF is correctly copied to inst/doc and R CMD check does not issue any > warning. > > Should we bring this up to R-Devel mailing list? I'm not sure (checking right now) but I think this was fixed in r61843. The build machines are running r61836. The nightly build is underway but I will update R-devel tomorrow if doing so indeed fixes the problem. Thanks! Dan > > Cheers, > Norman > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel