Hi developers,

Just a reminder that now that the BioC release is behind us, we are
at the beginning of a new devel cycle, and this is a good time for
making the "deprecated -> defunct -> removal" shift in your package,
and for identifying features that are candidates for deprecation.

It's recommended to proceed in 3 steps (in this order):
  (1) remove the defunct stuff;
  (2) change status of deprecated stuff to defunct;
  (3) decide whether new features need to be deprecated and, if any,
      deprecate them ASAP.

See ?.Deprecated and ?.Defunct for how to deprecate/defunct functions.

Please let us know if you have any question or concerns about this.

Thanks,
H.

--
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpa...@fhcrc.org
Phone:  (206) 667-5791
Fax:    (206) 667-1319

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